Query= MSMg01no372_g14.b1 MSMg01no372_g14.b1 CHROMAT_FILE:
MSMg01no372_g14.b1 PHD_FILE: MSMg01no372_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:09 2005
(524 letters)
>mm_chr18_61745880_61746801
Length = 922
Score = 930 bits (481), Expect = 0.0
Identities = 514/535 (96%), Gaps = 19/535 (3%)
Strand = Plus / Minus
Query: 1 ttataccactaagaaatgatttctatataaaaccctcgtgctaaacttactacttttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttataccactaagaaatgatttctatataaaaccctcgtgctaaacttactacttttcta 696
Query: 61 cttccattgctgcattaaaaagaccaactctcatgactaactcccaaactagaaatactc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 695 cttccattgctgcattaaaaagaccaagtctcatgactaactcccaaactagaaatactc 636
Query: 121 catgtactttccaaattgtcctgatccaccacagttctctctcctcatgagggaacccat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 catgtactttccaaattgtcctgatccaccacagttctctctcctcatgagggaacccag 576
Query: 181 ggctgctacctttaatggctggtcatttttttttttttttttttacttaagacagaataa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 575 ggctgctacctttaatggctggtc-----tttttttttttttttacttaagacagaataa 521
Query: 241 acagtcta--ttttcttagtaacacaaacatcccataaaggccatttggtctattccctt 298
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acagtctacct---cttagtaacacaaacatcccataaaggccatttggtctattccctt 464
Query: 299 ccaaacctgaggtgacctaactacatttca---------gaccatttcttgactttttaa 349
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 463 ccaaacctgaggtgacctaactacatttcatacatttcagaccatttcttgactttttaa 404
Query: 350 aaacaaaaccagcacgcaaaccactagcatgacaacccccacgcttctgtcagtaatata 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaacaaaaccagcacgcaaaccactagcatgacaacccccacgcttctgtcagtaatata 344
Query: 410 ctgctccccctccctttcctcttcaagcactggatttttcctttgggcttcatgggatat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctgctccccctccctttcctcttcaagcactggatttttcctttgggcttcatgggatat 284
Query: 470 ataaaattttcctactacttactttttattacaaatgttttcaagaataaaattg 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ataaaattttcctactacttactttttattacaaatgttttcaagaataaaattg 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 922
Length adjustment: 10
Effective length of query: 514
Effective length of database: 912
Effective search space: 468768
Effective search space used: 468768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_g14.g1 MSMg01no372_g14.g1 CHROMAT_FILE:
MSMg01no372_g14.g1 PHD_FILE: MSMg01no372_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:09 2005
(508 letters)
>mm_chr18_61574861_61575768
Length = 908
Score = 948 bits (490), Expect = 0.0
Identities = 502/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Plus
Query: 1 ttcccagcaattctcctgtctcaggagaatttcaaagatagtctgaattggtgtttgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccagcaattctcctgtctcaggagaatttcaaagatagtctgaattggtgtttgcca 260
Query: 61 aatatgtcgtacaggggattcctgagttgagcatgaatgagaataggtggggtttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgtcgtacaggggattcctgagttgagcatgaatgagaataggtggggtttaaaaa 320
Query: 121 tatttgggattacagaatttaggcttaaagtcagaattatgtgcagcagaaataacaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttgggattacagaatttaggcttaaagtcagaattatgtgcagcagaaataacaatg 380
Query: 181 gcccagaagtcaagagcctttcattcattcatgcatgcattcattcaccaaatacctgcc 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccagaagtcaagagcc----attcattcatgcatgcattcattcaccaaatacctgcc 436
Query: 241 gcatgtgacactgtacaacagagttgagcactggtttgagctaggtccctacacagccac 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 437 gcatgtgacactgtacaacagagttgagcactggtttgagttaggtccctacacagccac 496
Query: 301 acctaaaataatcctactgaatgcaagcccaagctaggcattagacgggtggctactgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acctaaaataatcctactgaatgcaagcccaagctaggcattagacgggtggctactgac 556
Query: 361 ttggtggcaaagagggggaatcgaatgtgactcaaggaagtcatgaaggctaccgctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttggtggcaaagagggggaatcgaatgtgactcaaggaagtcatgaaggctaccgctgat 616
Query: 421 gacctccaagtctgttgctattgcctcggttccactgcctctctcttgcttcaacagcca 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 gacctccaagtctgttgctattgccttggttccactgcctctctcttgcttcaacagcca 676
Query: 481 caacaggctcctccatgctcttccttga 508
||||||||||||||||||||||||||||
Sbjct: 677 caacaggctcctccatgctcttccttga 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
