BAC Information

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BAC

Clone NameMSMg01-374C24
Chromosome18 (Build37)
Map Location 84,503,973 - 84,683,162
singlet/doubletdoublet
Overlap geneZfp407
Upstream geneLOC665284, Tshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374C24.T7 (MSMg01no374_c24.b1)MSMg01-374C24.TJ (MSMg01no374_c24.g1)
ACCAG480042AG480043
length785765
length of high quality
(start - end)		395 (170 - 564)464 (72 - 535)
definitionCHROMAT_FILE: MSMg01no374_c24.b1 PHD_FILE: MSMg01no374_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:20 2005CHROMAT_FILE: MSMg01no374_c24.g1 PHD_FILE: MSMg01no374_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,503,973 - 84,504,366)(84,682,699 - 84,683,162)
sequence
NTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAAGCAGTGTTTCCTTACTACACAGCCATGACACAGG
CATCTGCCTGTGGTGGACTGGAAAGTGTGCAGGGCGCAAGCAGGCAAGGA
CACTCTGCCTGCAGGAGAGGACTACTCACAGGCACAACTGATGAACATTT
TCCAGAGGAACTCCTGTTTGAAGAAAGCCTTGCTTCACCAATGCCCATCA
TGAATATGAGCTCAACTTTCTAGTCTTTCAGAACCATGTCTACCATGAAG
TCCGAGCCATCAAATAGGGCAGCAGCACAACAGAGCAACGAGCAGAAGAG
CCTCAGGTAGTGAGACCGTGAAGTAGCAGCTCTATTGCTACTTCATGACA
AGGAACGCCAACTCCAACTTTCTTGTGATCTGAATAGGAGGAACTATTCT
TAATTAGTAGAATAAACAAAGAGCTTTACATGTAAATCATGTATAATATT
AATGCAGGTATCTTCATTTTATAATTTTTATGACTATTGTAATTTTATTA
AAAATTAAAGAAAAATTAATGCTAACTCCAATTTATTCTAAAAGAAATTG
TGAGATTCACTTCACATGTCTAATCTCGCTTCTTTCTCTTCTATANCATC
AACTTTTTCCCTTCTTACAATTCCGGGGGAAATCCGAGCAGCCCAGGGAG
CCTTGGGGAGGAAAATAAGAAATCTCCCGAAGACTGATCCCAAAGGAAAA
ATTATCCCCGGGGGACTTTTTCCTCCAAATCAGGA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTCCAGAGGTTTAAGATCACTCCAAAT
CAGTGCCTTTGGAAAATAGGAAATAATTTTCTGTTCAATTTGAAATTGAT
TTAATTTATGCCTTTGACAGCTATTTTGCTTTGATATTTTTGTAGTGGGA
ATCAGAGAGCTGTTGGTCAGAGTTGTAATTTTCTATGACATCATATACTA
GCTTGTGAGAAGCTCACTCTCCTGCTTTTGATGAGTTTCTGAACAGTCTG
CATGGTAAGAGATGCTCAGTAATTATTTGTGAGCCTGTAGATTAGCAGCA
TTTAGGGAGTCTTACAGGCTTATTCTGAGGATCCCTCCACTACCACCCCT
CTTCCCCCATACTGGGAAAGCTGTATGCAGTCTTATAATGTATATTTTAA
ATGGAGTTTTAAGAGAAAGCAGTTTTTCTTTCTATTATATTACACAGGTA
AATAAATACCTTGCACTAGGATCATCTGGAATTTAGAANGTATGGCACAT
GTCTCTAATCATAGCCTTTGGGTATAGAGGCAGGAATATTCCCGAGAGTT
TTAGACCACCTGTGGCTATGGGAAATTGTGAGNTTGATGGCCGCTGAATT
TATAGGGGGGTTTAAAGGGAACCCCCCCTTTTTTATTAAAATTTTCTCCC
TTAATTTTCAAAGGAATCCCCAAACCCCCTTAAACTCCCGGGGCGGGGTC
CTCAACAAATAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_c24.b1 MSMg01no374_c24.b1 CHROMAT_FILE:
MSMg01no374_c24.b1 PHD_FILE: MSMg01no374_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:20 2005
         (395 letters)



>mm_chr18_84503772_84504566
          Length = 795

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   actactcacaggcacaactgatgaacattttccagaggaactcctgtttgaagaaagcct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 actactcacaggcacaactgatgaacattttccagaggaactcctgtttgaagaaagcct 261

                                                                       
Query: 62  tgcttcaccaatgcccatcatgaatatgagctcaactttctagtctttcagaaccatgtc 121
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcttcaccaatgcccatcataaatatgagctcaactttctagtctttcagaaccatgtc 321

                                                                       
Query: 122 taccatgaagtccgagccatcaaatagggcagcagcacaacagagcaacgagcagaagag 181
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 taccatgaagtccgagccatcaaataggtcagcagcacaacagagcaacgagcagaagag 381

                                                                       
Query: 182 cctcaggtagtgagaccgtgaagtagcagctctattgctacttcatgacaaggaacgcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctcaggtagtgagaccgtgaagtagcagctctattgctacttcatgacaaggaacgcca 441

                                                                       
Query: 242 actccaactttcttgtgatctgaataggaggaactattcttaattagtagaataaacaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actccaactttcttgtgatctgaataggaggaactattcttaattagtagaataaacaaa 501

                                                                       
Query: 302 gagctttacatgtaaatcatgtataatattaatgcaggtatcttcattttataattttta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagctttacatgtaaatcatgtataatattaatgcaggtatcttcattttataattttta 561

                                             
Query: 362 tgactattgtaattttattaaaaattaaagaaaa 395
           ||||||||||||||||||||||||||||||||||
Sbjct: 562 tgactattgtaattttattaaaaattaaagaaaa 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_c24.g1 MSMg01no374_c24.g1 CHROMAT_FILE:
MSMg01no374_c24.g1 PHD_FILE: MSMg01no374_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:20 2005
         (464 letters)



>mm_chr18_84682499_84683362
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttccagaggtttaagatcactccaaatcagtgcctttggaaaataggaaataattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttttccagaggtttaagatcactccaaatcagtgcctttggaaaataggaaataattttc 605

                                                                       
Query: 61  tgttcaatttgaaattgatttaatttatgcctttgacagctattttgctttgatattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgttcaatttgaaattgatttaatttatgcctttgacagctattttgctttgatattttt 545

                                                                       
Query: 121 gtagtgggaatcagagagctgttggtcagagttgtaattttctatgacatcatatactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtagtgggaatcagagagctgttggtcagagttgtaattttctatgacatcatatactag 485

                                                                       
Query: 181 cttgtgagaagctcactctcctgcttttgatgagtttctgaacagtctgcatggtaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttgtgagaagctcactctcctgcttttgatgagtttctgaacagtctgcatggtaagag 425

                                                                       
Query: 241 atgctcagtaattatttgtgagcctgtagattagcagcatttagggagtcttacaggctt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 424 atgctcagtaattatttgtgagcctgtagattagcatcatttagggagtcttacaggctt 365

                                                                       
Query: 301 attctgaggatccctccactaccacccctcttcccccatactgggaaagctgtatgcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attctgaggatccctccactaccacccctcttcccccatactgggaaagctgtatgcagt 305

                                                                       
Query: 361 cttataatgtatattttaaatggagttttaagagaaagcagtttttctttctattatatt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 304 cttataatgtatattttaaatggagctttaagagaaagcagtttttctttctattatatt 245

                                                       
Query: 421 acacaggtaaataaataccttgcactaggatcatctggaattta 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acacaggtaaataaataccttgcactaggatcatctggaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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