Query= MSMg01no377_l16.b1 MSMg01no377_l16.b1 CHROMAT_FILE:
MSMg01no377_l16.b1 PHD_FILE: MSMg01no377_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:01 2005
(452 letters)
>mm_chr18_56582548_56583399
Length = 852
Score = 710 bits (367), Expect = 0.0
Identities = 422/449 (93%), Gaps = 17/449 (3%)
Strand = Plus / Plus
Query: 5 gaattctgttctaacgcgtgtggttgggcatcagtggtataaagggctaccctgtgattc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 220 gaattctgttctaaggcgtgtggttgggcatcagtggtataaagggctaccctatgattc 279
Query: 65 attcacttgacaaatatttattgagcattcaacatgaagctgacacttttggatacatta 124
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 280 attcatttggcaaatatttattgaacattcaacatgaagctgacacttttggatacatta 339
Query: 125 atgaacatagcaaatagggtctttgttttagga-tctagtccattctttttttttttttg 183
|||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 340 atgaacatagcaaatagggtctttgtttta-gagtctagtcca--------ttttttttg 390
Query: 184 attacatattttcctcaattacatttccaatgctatcccaaaagtcccccataccctcct 243
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attacgtattttcctcaattacatttccaatgctatcccaaaagtcccccata------- 443
Query: 244 cccccccccacttccctacccacccattaagcgtgagaactgatgggaaaaaaacagacc 303
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 ccccccccaacttccctacccacccattaagggtgagaactgatgggaaaaaaacagacc 503
Query: 304 gaaaactcattacctatatgagtcatcagctgtctccctccctccagcaggcacactaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaaactcattacctatatgagtcatcagctgtctccctccctccagcaggcacactaga 563
Query: 364 gaggtgtagactttttgctatgtctagaatgtgccaagctcagcaaccagtctgtggtga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaggtgtagactttttgctatgtctagaatgtgccaagctcagcaaccagtctgtggtgg 623
Query: 424 tttgtatatgcttggcccaggaaacggca 452
||||||||||||||||||||| |||||||
Sbjct: 624 tttgtatatgcttggcccagggaacggca 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_l16.g1 MSMg01no377_l16.g1 CHROMAT_FILE:
MSMg01no377_l16.g1 PHD_FILE: MSMg01no377_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:01 2005
(409 letters)
>mm_chr18_56784322_56785130
Length = 809
Score = 752 bits (389), Expect = 0.0
Identities = 405/411 (98%), Gaps = 2/411 (0%)
Strand = Plus / Minus
Query: 1 cagttttgttttg--ttttttttttttcttgaggcaggctcttgctagggtagctctagc 58
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cagttttgttttgttttttttttttttcttgaggcaggctcttgctagggtagctctagc 721
Query: 59 tattctggaactcactatgtcaaccaggctggcctctaactcacagatatcagcctgtct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tattctggaactcactatgtcaaccaggctggcctctaactcacagatatcagcctgtct 661
Query: 119 ctgcctcccaggtattgggactaaaggtgcgtaccatcacgccaagctgaagatagaact 178
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 660 ctgcctcccaggtattgggactaaaggtgcgtaccatcacgccgagctgaggatagaact 601
Query: 179 ctgattgacagcaagcacttttacctgccattccatcttgctggcccagtagcccttctt 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgattgacagcgagcacttttacctgccattccatcttgctggcccagtagcccttctt 541
Query: 239 gatcactatcattgatccactcacacacccattcttccaggcattcatggttccacacat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gatcactatcattgatccactcacacacccattcttccaggcattcatggttccacacat 481
Query: 299 agcactctttccaggcacaccaatggtcaggtccgtgatccctatatacccttttattgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agcactctttccaggcacaccaatggtcaggtccgtgatccctatatacccttttattgg 421
Query: 359 aacagcttcctctccacccagagagaatacaaagcgtccctcctgaagtcc 409
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aacagtttcctctccacccagagagaatacaaagcgtccctcctgaagtcc 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
