BAC Information

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BAC

Clone NameMSMg01-378E21
Chromosome18 (Build37)
Map Location 31,808,623 - 31,809,064
singlet/doubletsinglet
Overlap geneSap130
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E21.T7 (MSMg01no378_e21.b1)MSMg01-378E21.TJ (MSMg01no378_e21.g1)
ACCAG483182AG483183
length790775
length of high quality
(start - end)		446 (50 - 495)443 (78 - 520)
definitionCHROMAT_FILE: MSMg01no378_e21.b1 PHD_FILE: MSMg01no378_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:46 2005CHROMAT_FILE: MSMg01no378_e21.g1 PHD_FILE: MSMg01no378_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCCCTTCCTTTTTGCTGTTTGGGGGGATTTCCAGGGCAAAC
CATGTATAATTCAAGGGCTGTACACTGATGTGCAGTCTTGAGTCAGGTCA
TTCCTTTCGGACTCTGAGTATTGTCTACAGCTATACTGGTCTACACATGC
CCAATCTCCATTGGGAGTATCCCAGGGAAAGGGGCTCCATGAGCCTTTTC
ATCTGCTGTGTTTTAATAACGGCCCCTGTAAATGAGCAGGTCCGAAGTGA
GCATACTCCAATAGCCCCAACAAGTTACCAGACCCCAGTGCCACATGAGA
CCTCCGACTATTTCTTTTTAGTAACTCGAATCTGCACCAATCTTTTACAC
TTGTTCTCCCTTTCCTGGTCACAGGCTTATTTACCCCACCACTCTATTTT
TTTAAAAAATAGATCTTTATATCCATTATTCTTTATGCTACTTAAGATTT
CTGAATACATGTCAGTTAACGCCTCTAATGGCTTCAGCTCATCCCCTAAG
CTTTCCAGCACTCTGATATAAGTACATCGCAGATGACATTGCCAGAACTT
CTGGNATTTACTTGGCATGATTAAAGACAAAACAGGGCAAGGTTTTTTAA
AAATAATTTTTCTTGAAACACAAAGGAAAAGAAATTTGAGAATTATTTTC
TTCCCAGGGGTTAAATTCCAAGATTTAATAACCCCCTAACCCTTGGGGAA
ACAATTAATTTCTGTTTAACTGGGCCCTTTCTTGAATGGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCCCCTTTATGTATTGTCT
AATGGTTGGTGCACCAATCACGTGTCAATTCATGTATGTTTTCTGTCTCA
TTGTCTGAATGATTGTTTCGTTGTCTGAATGACTGTTTTATGTTTCATGT
TAAAAAGAAAAAAAAATGGTTAAAATTTTACCTGCTGAATCACTCTCAGT
TTGCACAACTGAGGCTGAGAGGCCCCTCCCTTTAGCCAAAATCAAGCACA
GCAGGAGAGGTCCTGCTGAAAAACTTAGAATCTTCAACCTCTTAGTTCTA
AGACAAATAAGCTGATAGCTGTTTTTCCTAAAAAAATTCTCTGCAAGTTT
GTGATTATTGTGTTTAGCAAATTACAAAGTGTTTTTTATCTTATAGTATA
GCTAAAAAGTAAAATTCTTTGATCTAAATTTGTAAGATTTATGTAGCCAC
TTCATTTGGTTTTTGACTGGTCTTAAAGGTATAAATATGATCTACATATC
TTGGTCATAGAAAATTGGCTTTTAAGTTATTTGGGTATGATTAAAAAGAT
GTATCACTGGGTATAAAGTTAACTTAAAAGTAGTAACTCAGGGCCAGAGT
CTTTTTTCAAAAAAAGACCTGGCATAAACCACCCCAAAAAACTATCCCTC
TAAAGAAATTCTAAAATTAAAAAACATTTTATGTATTTCTTATCCCAAAA
AAAACTTTCAAAATAAAATTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e21.b1 MSMg01no378_e21.b1 CHROMAT_FILE:
MSMg01no378_e21.b1 PHD_FILE: MSMg01no378_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:46 2005
         (446 letters)



>mm_chr18_31808419_31809264
          Length = 846

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccccttcctttttgctgtttggggggatttccagggcaaaccatgtataattca 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 646 gaattcccccttcctttttgctgtttggggggatttccagggcaaatcatgtataattca 587

                                                                       
Query: 65  agggctgtacactgatgtgcagtcttgagtcaggtcattcctttcggactctgagtattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agggctgtacactgatgtgcagtcttgagtcaggtcattcctttcggactctgagtattg 527

                                                                       
Query: 125 tctacagctatactggtctacacatgcccaatctccattgggagtatcccagggaaaggg 184
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctacagctatactactctacacatgcccaatctccattgggagtatcccagggaaaggg 467

                                                                       
Query: 185 gctccatgagccttttcatctgctgtgttttaataacggcccctgtaaatgagcaggtcc 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 466 gctccatgagccttttcatctgctgtgttttaataatggcccctgtaaatgagcaggtcc 407

                                                                       
Query: 245 gaagtgagcatactccaatagccccaacaagttaccagaccccagtgccacatgagacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaagtgagcatactccaatagccccaacaagttaccagaccccagtgccacatgagacct 347

                                                                       
Query: 305 ccgactatttctttttagtaactcgaatctgcaccaatcttttacacttgttctcccttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccgactatttctttttagtaactcgaatctgcaccaatcttttacacttgttctcccttt 287

                                                                       
Query: 365 cctggtcacaggcttatttaccccaccactctatttttttaaaaaatagatctttatatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cctggtcacaggcttatttaccccaccactctatttttttaaaaaatagatctttatatc 227

                                 
Query: 425 cattattctttatgctacttaa 446
           ||||||||||||||||||||||
Sbjct: 226 cattattctttatgctacttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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