CTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAATGATTTCACCTATATATTACATTTCTGGTAACATATC
CATATATTGAATTGTGTTGGTTTATATTTAATAACCAGACATGGTGATTT
ATGCTTGTAATCTCCTCACCTGAGAAATGTGGTCAGGAGACTGACAAGTT
TACAGTTATTGTTAAATACATAGCAAGTTTGAAGCTAGCCTGAGTTACAT
AAACTTCCTGACTCATAATAATAATTATGATAAAAATAACATATTTTTAA
AAAACCAAACTCAATGTAGTTAATAATTTGTTTCAGGTTGTAGTATATTA
ATTAGTATAGCTATATTTTTATAAAATTTAACTTTCACGATTTATTATTT
TATAGGCTCTATTTTAGCAACACATAATATATAAAATTTAGAGAATGATA
GAAAAATAATTGAATTTAATTGACAATTTTACTCATCACCTGATGATGTT
TTTGTTGCTCCATTCTAACCCTGCAGAAAGTTATTTTCTACGTGTAAGCT
GGAACATCTGTGTGATTCTCCCTCTGTTGTATCATCTTATATAGTTGAAG
ACAATCCTTTGCTCTCTTACTCCTTATCTCTCAATTAGCACTCTGTAAAG
TGAGTGGATTCAGTACTCTCCCAGAAATTATGTCACATTTTCTTTTGATA
TCAAAATGTGACAAACTTTCATTGGAAATACTCTTTTCAGAATGATATAC
TTAGA

TTTGTGAATGGTATAGTTAGNGATGTATTGTGCGCAGAAGACAGGTAGAG
TGANGTGAGAGGCAGGGGCAAACCAAATACTACGAGACCACGTAGGAATT
ATCAATTACAATAATAACCAGCTAAGAATCAGATTTTTACGAGATTCTAT
TATAATTTAGCGCACAAATCGCCGCTCGCGTTCTGCGCGCGAGTGCAGCG
ATGGCTTTCGGGTGCTGTTCACCAGTTTCGGGCTCGGGCTCNCTCGCGCT
GCCGCTTTCCCTGCACCGTATTACTACGCGTTTATCATAGCCTGCGTCTG
CGTTCTCGCTTTCGGATTTAGTTTCATATTAACGATCTACGAACACCACA
CACGAACCCACAGAATGATAAGTGAGAGATAGAAGTAAGCGTCAATACGA
TCATTCGGGCACGACGCGCTAGCCGGCGTATAAAGTGGTATTCGGTGGCC
GCACCGGCGCTGGTCGTGTAGAGGAAGGTGGGAGGGGGGGAGGGCAGAAA
GCGCAGGAGATAATATGTATTCAATATAGATTGTACCATATGAGAGAGAG
AAGTAGAATGAAAACAACACAATACTACATCCACATCGCACTCGATACAC
CCTAATCGAAGGTACATAACGTAAAAAGGATAAGACAGGTGGACTAGACA
AGTATATTAGTATACCAGACACCGTGTGCCAGCCTAGACTGCATTGTGTG
AGAGAGAGGCGCATTGAAGCTGGCAATCATAGAGTGGCGCGGCGCCACCA
GCAAAGTGGACACACACGGTGTCGAATACAGCGCAGCGACGAGACTTGTG
ACTGTCACATCAAGATGGGACGGGCGCAGACTGAGACGGCGGCGTCTCGT
AGTGCGTAGTGAGAGACAAGAACGCATCACTGAGCGGCCTATTTCTTAGC
GTAGGCGCGGATAGACCCATGCGTAATCGCGTGGTGCTTTGTTTGGCACA
CCGCTCGTCGTTTAGTGTNTCCATCGCACGCCCGTACGTATTCTTCGCGC
ACCATATCCCGCCGCCGCCCTCTCTCCGACAGCATGTTATCGCGGCAGGC
GACGCGGGATGTGAGTGTATTGGTATGCACGCGCTCCGCCGCTCGCCGCC
TACGCCGCTTTTATTTATTATCCGGGTGCTCGCGCCGCGCACCGTCGCTA
CCGG

Query= MSMg01no378_p02.b1 MSMg01no378_p02.b1 CHROMAT_FILE:
MSMg01no378_p02.b1 PHD_FILE: MSMg01no378_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:33 2005
         (562 letters)



>mm_chr18_88220161_88221122
          Length = 962

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaatg-atttcacctatatattacatttctggtaacatatccatatattgaat 63
           |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcaaaatgaattt-acctatatattacatttctggtaacatatccatatattgact 263

                                                                       
Query: 64  tgtgttggtttatatttaataaccagacatggtgatttatgcttgtaatctcctcacctg 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tgtgttggtttatatttaataaccagacatggtggtttatgcttgtaatctcctcacctg 323

                                                                       
Query: 124 agaaatgtggtcaggagactgacaagtttacagttattgttaaatacatagcaagtttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaatgtggtcaggagactgacaagtttacagttattgttaaatacatagcaagtttga 383

                                                                       
Query: 184 agctagcctgagttacataaacttcctgactcataataataattatgataaaaataacat 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agctagcctgagctacataaacttcctgactcataataataattatgataaaaataacat 443

                                                                       
Query: 244 atttttaaaaaaccaaactcaatgtagttaataatttgtttcaggttgtagtatattaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttttaaaaaaccaaactcaatgtagttaataatttgtttcaggttgtagtatattaat 503

                                                                       
Query: 304 tagtatagctatatttttataaaatttaactttcacgatttattattttataggctctat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagtatagctatatttttataaaatttaactttcacgatttattattttataggctctat 563

                                                                       
Query: 364 tttagcaacacataatatataaaatttagagaatgatagaaaaataattgaatttaattg 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttagcaatacataatatataaaatttagagaatgatagaaaaataattgaatttaattg 623

                                                                       
Query: 424 acaattttactcatcacctgatgatgtttttgttgctccattctaaccctgcagaaagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaattttactcatcacctgatgatgtttttgttgctccattctaaccctgcagaaagtt 683

                                                                       
Query: 484 attttctacgtgtaagctggaacatctgtgtgattctccctctgttgtatcatcttatat 543
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attttctatgtgtaagctggaacatctgtgtgattctccctctgttgtatcatcttatat 743

                              
Query: 544 agttgaagacaatcctttg 562
           |||||||||||||||||||
Sbjct: 744 agttgaagacaatcctttg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)