Query= MSMg01no379_d06.b1 MSMg01no379_d06.b1 CHROMAT_FILE:
MSMg01no379_d06.b1 PHD_FILE: MSMg01no379_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:54 2005
(546 letters)
>mm_chr18_88071123_88072068
Length = 946
Score = 1021 bits (528), Expect = 0.0
Identities = 540/544 (99%), Gaps = 2/544 (0%)
Strand = Plus / Minus
Query: 4 ggaattcgctggtgccatatttcacccaatggaatgaaag-tcagtacccctcaaagcat 62
||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 746 ggaattcactggtgccgtatttcacccaatggaatg-aagttcagtacccctcaaagcat 688
Query: 63 gatattcccagccctgcactctgtgtatgtgtaaggctgcttccaaagtcattgttttca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gatattcccagccctgcactctgtgtatgtgtaaggctgcttccaaagtcattgttttca 628
Query: 123 ttagtgttacgcctgccatttgaagagctgctgtgctgtgggagctactgatacaaatca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttagtgttacgcctgccatttgaagagctgctgtgctgtgggagctactgatacaaatca 568
Query: 183 accattataaaattttattgcattttattattgcataagtgttatgccaataaccgcatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 accattataaaattttattgcattttattattgcataagtgttatgccaataaccgcatt 508
Query: 243 gaaagaaaactattggtgtttaacatgtaacaaatcccaagcataatgtgatttgaaacc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaagaaaactattggtgtttaacatgtaacaaatcccaagcataatgtgatttgaaacc 448
Query: 303 ttcatttaatgcatgagtaaacattgtttcacagacacggttggtttgagaaagaaccag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcatttaatgcatgagtaaacattgtttcacagacacggttggtttgagaaagaaccag 388
Query: 363 ctcaattttacttgtgataaaaaaatgctctgataaaaaaaagatatgttcaatctatta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcaattttacttgtgataaaaaaatgctctgataaaaaaaagatatgttcaatctatta 328
Query: 423 tctggactcatatctgtcattgaaatagaaataagaggttcatgcataaaaacagaccag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctggactcatatctgtcattgaaatagaaataagaggttcatgcataaaaacagaccag 268
Query: 483 tgaaagcacagcaaggctatagaaattcaatcacactaaaacacacattattttgacatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaaagcacagcaaggctatagaaattcaatcacactaaaacacacattattttgacatt 208
Query: 543 ttaa 546
||||
Sbjct: 207 ttaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_d06.g1 MSMg01no379_d06.g1 CHROMAT_FILE:
MSMg01no379_d06.g1 PHD_FILE: MSMg01no379_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:54 2005
(474 letters)
>mm_chr18_87892492_87893365
Length = 874
Score = 901 bits (466), Expect = 0.0
Identities = 472/474 (99%)
Strand = Plus / Plus
Query: 1 agtacaaactttggatattatttaaattaagttgtacagaattcctttgtgttagttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacaaactttggatattatttaaattaagttgtacagaattcctttgtgttagttgtt 260
Query: 61 ggagtagtaataagcagaacaaagacagaaagtctacattattgtaatgagatacaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtagtaataagcagaacaaagacagaaagtctacattattgtaatgagatacaggac 320
Query: 121 caatgaataaagaagactgggagatatctacacagtcatgcacttaacttctattttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgaataaagaagactgggagatatctacacagtcatgcacttaacttctattttctt 380
Query: 181 cttaatttaccgtggctattgtaaatcatattgttagtgtatccaataatgttacaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatttaccgtggctattgtaaatcatattgttagtgtatccaataatgttacaggaa 440
Query: 241 atgcattttagaatcttgttttattagtgacgaaattatgtcattttttatttacatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcattttagaatcttgttttattagtgacgaaattatgtcattttttatttacatagt 500
Query: 301 caaagatttattacatttgaagcttttgaaaacagtattagcttaatttttgtcatgaat 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagatttattacatttaaagcttttgaaaacagtattagcttaatttttgtcatgaat 560
Query: 361 atgtgtataaaaatggaaatgactcagatgtttcttttattgttttgagtttataaataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtataaaaatggaaatgactcagatgtttcttttattgttttgagtttataaataa 620
Query: 421 ttatagcattttgttcttctctttcctctccacaaaaagtcacatatactctgc 474
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ttatagcattttgttcttctctttcctctccacaaacagtcacatatactctgc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
