Query= MSMg01no379_h05.b1 MSMg01no379_h05.b1 CHROMAT_FILE:
MSMg01no379_h05.b1 PHD_FILE: MSMg01no379_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:13 2005
(531 letters)
>mm_chr18_40505602_40506533
Length = 932
Score = 899 bits (465), Expect = 0.0
Identities = 518/551 (94%), Gaps = 31/551 (5%)
Strand = Plus / Minus
Query: 5 gaattccatagcttac--tcagatgcttaattaactaattaattaattagtgcaaaaaaa 62
||||| |||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct: 745 gaattacatagc--acaatcagatgcttaattaactaattaattaattagtgc----aaa 692
Query: 63 aaaaaaccaaaatgaaa-caaaacaaacaaac----------aaaaaaaaaacctcagca 111
|||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct: 691 aaaaaaccaaaa-caaaccaaaacaaacaaacaaaaaaaaaaaaaaaaaaaacctcagca 633
Query: 112 tggaccacagtgatatgtttgtaagagtctatatctctaactcaggaatgtgaggaaaat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tggaccacagtgatatgtttgtaagagtctatatctctaactcaggaatgtgaggaaaat 573
Query: 172 gtaagacaaaggaacttttaaaaaggaaaagatgcattctctcatacacttgggatatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtaagacaaaggaacttttaaaaaggaaaagatgcattctctcatacacttgggatatat 513
Query: 232 ttattccaaataaattgtacagagctgtgacatctatgaacaaaatgagacaaacaatgc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttattccaaataaattgtacagagctgtgacatctatgaacaaaatgagacaaacaatgc 453
Query: 292 aaaaatatcaagccccattctccaggattcatgacaaattaatcctccctgacagctggc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaaatatcaagccccattctccaggattcatgacaaattaatcctccctgacagctggc 393
Query: 352 cagaatgaattttttttttaaaaaaa-ggaaacaaaacaaaatcaaacaaacagactctt 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 392 cagaatgaattttttttttaaaaaaaaggaaacaaaacaaaatcaaacaaacagactctt 333
Query: 411 cctcaagagatactgcattaaagacaggc----------gactgtcataactatcatcta 460
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 cctcaagagatactgcattaaagacaggccgtttctaacgactgtcataactatcatcta 273
Query: 461 ttctccaaaggcttgaccctatggttgaacaaagaaacaaaattctccaattctaaagcc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttctccaaaggcttgaccctatggttgaacaaagaaacaaaattctccaattctaaagcc 213
Query: 521 tgctctatctg 531
|||||||||||
Sbjct: 212 tgctctatctg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_h05.g1 MSMg01no379_h05.g1 CHROMAT_FILE:
MSMg01no379_h05.g1 PHD_FILE: MSMg01no379_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:13 2005
(443 letters)
>mm_chr18_40356216_40357055
Length = 840
Score = 833 bits (431), Expect = 0.0
Identities = 439/443 (99%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 1 tcaccacaggaatgggtttctgagaagaggttttgtgattttgttaatatcagcaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccacaggaatgggtttctgagaagaggttttgtgattttgttaatatcagcaaaaa- 259
Query: 61 tggattctgttttgttttatatttatttttgccttgttggtttgtttagggtttcttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 --gattctgttttgttttatatttatttttgccttgttggtttgtttagggtttcttttc 317
Query: 121 tctgtgtagctttgactgttctagaactcactttatagaccaggctgtcctcaaactcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctgtgtagctttgactgttctagaactcactttatagaccaggctgtcctcaaactcac 377
Query: 181 agagattctcctgcctctacctaagtgttaggattaaaggcacaccccaataattcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agagattctcctgcctctacctaagtgttaggattaaaggcacaccccaataattcatgg 437
Query: 241 cctgtttgtttatttttaaagtgtcacataatttacttggaaattaacttgaaggaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctgtttgtttatttttaaagtgtcacataatttacttggaaattaacttgaaggaatta 497
Query: 301 acattttcgttacttaattaagtattcatgacttttaaaagaaattttgttgactctttg 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acatttccgttacttaattaagtattcatgacttttaaaagaaattttgttgactctttg 557
Query: 361 tgaatctcacatcatgcactccaatctcactaatctcccagtccctccatattccacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgaatctcacatcatgcactccaatctcactaatctcccagtccctccatattccacctc 617
Query: 421 tttccttgtaaccatccctccaa 443
|||||||||||||||||||||||
Sbjct: 618 tttccttgtaaccatccctccaa 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 840
Length adjustment: 9
Effective length of query: 434
Effective length of database: 831
Effective search space: 360654
Effective search space used: 360654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
