Query= MSMg01no382_f21.b1 MSMg01no382_f21.b1 CHROMAT_FILE:
MSMg01no382_f21.b1 PHD_FILE: MSMg01no382_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:05 2005
(553 letters)
>mm_chr18_43102809_43103761
Length = 953
Score = 994 bits (514), Expect = 0.0
Identities = 543/560 (96%), Gaps = 12/560 (2%)
Strand = Plus / Minus
Query: 6 ggaattcctttcttcattcttttgttcattc------------cttccttccttcctttc 53
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 816 ggaattcctttcttcattcttttgttcattccttccttcctttcttccttccttcctttc 757
Query: 54 ttcttcatccgtttgctccttcattttaattatgatttttttccttcatatttcttcaaa 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttcttcatccgtttgctccttcattttaattatgatttttttccttcatatttcttcaaa 697
Query: 114 gtgtgcttctcttaacgtaattttggcaactgttatctgacgtaaaaatataaatcataa 173
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 696 gtgtgtttctcttaacgtaattttggcaactgctatctgacataaaaatataaatcataa 637
Query: 174 gtgggtgtgattttaaaatcatgaaaaccgatttagaaatgaccacagcaatggaaacag 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtgggtgtgattttaaaatcatgaaaaccgatttagaaatgaccacagcaatggaaacag 577
Query: 234 atattcaggagaaaagtaaatcaaagccgttgtgcctggtgcccaagtcaaacaagtcaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atattcaggagaaaagtaaatcaaagccgttgtgcctggtgcccaagtcaaacaagtcaa 517
Query: 294 gacttacctaaagccttgcctgctatgtggaagcacagaaagtggtataaagaattttaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gacttacctaaagccttgcctgctatgtggaagcacagaaagtggtataaagaattttaa 457
Query: 354 ctcctacttctggagctgtgaaggcatggagaagcaatcctatctgctcaaccatgcgat 413
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 456 ctcctacttctggagctgtgaaggcatggagaagcgatcctatctgctcaaccatgtgat 397
Query: 414 ggctctctggagatctgattaagaagaacccttaggccaagtctagactaagtagaaaag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggctctctggagatctgattaagaagaacccttaggccaagtctagactaagtagaaaag 337
Query: 474 gtcaaaattgattactgaagtctacacagttgtagggtaatgcaggctctctgtaattct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtcaaaattgattactgaagtctacacagttgtagggtaatgcaggctctctgtaattct 277
Query: 534 ctgctattccaagcctgcaa 553
||||||||||||||||||||
Sbjct: 276 ctgctattccaagcctgcaa 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_f21.g1 MSMg01no382_f21.g1 CHROMAT_FILE:
MSMg01no382_f21.g1 PHD_FILE: MSMg01no382_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:05 2005
(481 letters)
>mm_chr18_42928895_42929776
Length = 882
Score = 893 bits (462), Expect = 0.0
Identities = 477/482 (98%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 aggcactggtcttgccatacaatccactctacagcaatggcatttcctcactgagaccag 60
|||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 201 aggcactgttcttgccatacaatccactccacagaaatggcatttcctcactgagaccag 260
Query: 61 tggaagatgagggtgttttctctggagaggatgcataggtccaaggttaacgtatagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagatgagggtgttttctctggagaggatgcataggtccaaggttaacgtatagatg 320
Query: 121 aactgaaccacacaagaggaaacggagttgggggatgtgctctgtattccactgccacag 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aactgaaccacacaagaggaaacggagtggggggatgtgctctgtattccactgccacag 380
Query: 181 tccccatcttttt-attatttgtataaatcatttggctttgaagatgccaaaggccaagc 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccatcttttttattatttgtataaatcatttggctttgaagatgccaaaggccaagc 440
Query: 240 ctccaagtgcactgatgagaataaattggatagcacaataaataacgggcagaaccaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaagtgcactgatgagaataaattggatagcacaataaataacgggcagaaccaggc 500
Query: 300 tgccaaatgaagaaggatttagattacttaaatcctaggctaggagttgtcaaatccagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccaaatgaagaaggatttagattacttaaatcctaggctaggagttgtcaaatccagt 560
Query: 360 ttaatgctgataagtgtgggataataactctttgcaaacagccctattcccaccaaacac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatgctgataagtgtgggataataactctttgcaaacagccctattcccaccaaacac 620
Query: 420 ccccgtgcaaacccctttggttcttttgcctaccctgtgcaagctgaaagaaacccgagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccgtgcaaacccctttggttcttttgcctaccctgtgcaagctgaaagaaacccgagg 680
Query: 480 gg 481
||
Sbjct: 681 gg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
