BAC Information

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BAC

Clone NameMSMg01-383P04
Chromosome18 (Build37)
Map Location 78,920,221 - 78,920,808
singlet/doubletsinglet
Overlap genenone
Upstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneSetbp1, LOC100039242, LOC100039250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P04.T7 (MSMg01no383_p04.b1)MSMg01-383P04.TJ (MSMg01no383_p04.g1)
ACCAG487499AG487500
length1,248739
length of high quality
(start - end)
---589 (70 - 658)
definitionCHROMAT_FILE: MSMg01no383_p04.b1 PHD_FILE: MSMg01no383_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:07 2005CHROMAT_FILE: MSMg01no383_p04.g1 PHD_FILE: MSMg01no383_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTGATGTGTAGTCATAATCTCCCTACTTCTTATACTGGCATCACGACGA
TCTAGGAACACGGAAGTCAACAGGTATCGATGAGCGCAGTAACCACGACT
ATACGAAACGAAGTACGCACTGTCTCTCACCTTTTCACTCCGACCACGAT
CCGCACCACCCCATCCAGCAGTAATCACATGTGCTGCGTCAGTGGCTGTG
GCAGTGTGTGAATTGTACGTGCGAACGTGCGCAGGAGGATGCGTGCATGT
ACAGAATGCACTACGCCCCTCACTGTCTAATAGTAAGATGCATATAACTT
CTTAGCACATAAATTACCAGGCCGTGAGAGTCGACCCATTGAAGGATCGA
ATCTTGGCGAACACGACACTAAGTCGCTCTCTCCCAACCCGCTTCTTGCT
CAATATGCGGTGAAATAATACGTGTAAGCATGGCTCGATATAAATGAATG
TTCTCATATAGAGACCTATTTTCATAGACTCAAAGTTATTAGACGCACGT
AATAGAATCACATGGAATAGAGAGTCGCCGGACTGACCTTATATACTATA
CGTCTCCCGCTTCTGTTGTGTTTACATAAATCTGCGCCGCACAATGACTT
TACGTGTATCCAGTACAGGCGGTGGGATTGTTTGGCAGTGTGACGGTGTG
CCGACTGCTTCTTCGCCAGTCAATTTAGTTCGGTTAGACGGTACGTCGTT
ATGTTTATAACTACATAGAGATATACATACGCTCATCACGATATGTAACA
TTAGTCTGATGTCGATGTCGGCTGGGCATTGCGTATAATCTGTGACAGTG
AAGTAACCTCGTTGTTCTCGATACTAGTAATCTATACGAATTATATGACA
TTGTCAAAACAGACGATATACGCGTGCAAATGCAGCTAGGGCGGGCGAGT
GAATCGCGANCCTTCCTCTGATGTGTCGCAGCAAGTATTAATGATAGTGA
CGATTTCTGAGGTGCGGCCTAGTTCAAGGCCGCGAGATAATGCTATGCAT
AATATAAATATGACGGCGCGTATTTCGCTATGCGGCCAGTAATACGGACC
TCGTACGATATTTTGGTGAATTATACCACACCGGAATACCGCGGTATTCC
GTCCTATCATCTCTATTTCATTGCGGATTCTCCGGAGCTTTACGAGCCGA
CGATAATATAGTGTGGTGGCGTGCGAAATAAAGCAGCGAGGTCTGATGGC
ACACACGCTCTCGCGCACGCATAGAGCGGTGCGGTCAGGCGGAATACA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGATGAAACCCTTGGGCTTGAAATACGATC
ACTTTTGGTCAAGTCCAAAACAAATGGCCAACATCTCTATGTACAGAGGA
TTCTTCTGTTCCTATTCCCAGACACTTTTCCTAAAGAGAAATAAATGGGG
GAAAAGAGGATAATTATGTATTGAATTCCTTCTCTGACGTCGTGAATTTC
TCCTCTCCTTCCCCCCACGCTAACTCTCCCAAATCACAGTAGTGATCCGA
AGTCTATTAGAGCAAAATCAGCTGAAAGAACGTGATTTCCATTAAGGTGG
ATGGGGCCAATTGCTGTTGATAGATATTCTTTTAAGTAAGTAGCCAGTTC
TGCAGAGGATATAGACTGTTTATGTATGATTAATTAGGAAATAATTGTTT
TAGACTGGAGGAATGTGAAAGAATAAATGGACCATAAAAATCTAAATAAA
CATCCAGGCTTCTGCCTTTCCTTTCAATCAGGGCCAGGGAGATTTATGAT
TTTTCTTTTAAAAAAAATGATAAACTTGCATCCTATCCTCCGAGCATTTT
TAAAATCCAAAAATATTATCAACACATGGTTCGTACTGTTCTTTCTTTTT
TCCCATTTGCTGCCTGTAGACACCTCACTGTCACTGTCACAGAGGTTATT
ATTCATCCGTATAAAGCTCCCATTTCTTTTTTTAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p04.g1 MSMg01no383_p04.g1 CHROMAT_FILE:
MSMg01no383_p04.g1 PHD_FILE: MSMg01no383_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:08 2005
         (589 letters)



>mm_chr18_78920021_78921008
          Length = 988

 Score = 1079 bits (558), Expect = 0.0
 Identities = 582/590 (98%), Gaps = 3/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatgaaacccttgggcttgaaatacgatcacttttggtcaagtccaaaacaaatggcc 60
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 201 ttgatgaaacccttgggcttgaaatacaatcacttttggccaagtccaaaacaaatggcc 260

                                                                       
Query: 61  aacatctctatgtacagaggattcttctgttcctattcccagacacttttcctaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatctctatgtacagaggattcttctgttcctattcccagacacttttcctaaagaga 320

                                                                       
Query: 121 aataaatgggggaaaagaggataattatgtattgaattccttctctgacgtc-gtgaatt 179
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aataaatgggggaaaa-aggataattatgtattgaattccttctctgacgtccgtgaatt 379

                                                                       
Query: 180 tctcctctccttccccccacgctaactctcccaaatcacagtagtgatccgaagtctatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctcctctccttccccccacgctaactctcccaaatcacagtagtgatccgaagtctatt 439

                                                                       
Query: 240 agagcaaaatcagctgaaagaacgtgatttccattaaggtggatggggccaattgctgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agagcaaaatcagctgaaagaacgtgatttccattaaggtggatggggccaattgctgtt 499

                                                                       
Query: 300 gatagatattcttttaagtaagtagccagttctgcagaggatatagactgtttatgtatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatagatattcttttaagtaagtagccagttctgcagaggatatagactgtttatgtatg 559

                                                                       
Query: 360 attaattaggaaataattgttttagactggaggaatgtgaaagaataaatggaccataaa 419
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 attaattaggaaataattgttttagactggagaaatgtgaaagaataaatggaccataaa 619

                                                                       
Query: 420 aatctaaataaacatccaggcttctgcctttcctttcaatcagggccagggagatttatg 479
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatc-aaataaacatccaggctgctgcctttcctttcaatcagggccagggagatttatg 678

                                                                       
Query: 480 atttttcttttaaaaaaaatgataaacttgcatcctatcctccgagcatttttaaaatcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 atttttcttttaaaaaaaatgataaacttgcatcctatcctccgagcattttttaaatcc 738

                                                             
Query: 540 aaaaatattatcaacacatggttcgtactgttctttcttttttcccattt 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaaatattatcaacacatggttcgtactgttctttcttttttcccattt 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space:   566262
Effective search space used:   566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)