BAC Information

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BAC

Clone NameMSMg01-384E04
Chromosome18 (Build37)
Map Location 18,153,251 - 18,153,745
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E04.T7 (MSMg01no384_e04.b1)MSMg01-384E04.TJ (MSMg01no384_e04.g1)
ACCAG487739AG487740
length786749
length of high quality
(start - end)		310 (33 - 342)573 (64 - 636)
definitionCHROMAT_FILE: MSMg01no384_e04.b1 PHD_FILE: MSMg01no384_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:31 2005CHROMAT_FILE: MSMg01no384_e04.g1 PHD_FILE: MSMg01no384_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAAAGT
ATTTAATTTCTTTATTTCTTCTTTGATACAGTGGTCATCAGGTAGAAGGG
TGTTCAATTTCCATGATTTTATAGGTCTTCTGTTGTTTCTGTTGTGGAAA
TGTAGATTAAGCTACATTTTGTTTCTATCTTAGTTGCTGAAGTATGTAGC
AGATGGCTCTAGTTTATGTATCCACTTTGTTAGCCTTTGTCTTTTAAATG
GGAAATTGAGTTCATTGATGTTGAAAGAACCTAATGAAAAATGATTGTTA
GTTTCTGGTATTTTGATGTTGGTAGGGGTTGTGTGTGTGTGTGCGTTTNT
TTTNNTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTN
TNTTNNTTTTTTTTTTTTTTTTTTTTTCCTTTCTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTCTCTCCTTTTCTCTTTCTCCCCTTTC
CTTTTTTTCTCTTCCTTCTTTTCCCTTCCTCCTCTCTTTTCTTCCTTCCC
CTTCTCTCCCCTCTCCTTTTTCTTTTCCCCCCCCCTTTTTTTTCCCTCTT
TCCCCTCCTCCTTTTTTTCCCCTTCCTCTCCCTCTCCCCCCTTCTTCCCT
CTTCCCTTTTTTTCCTCTTTTTTTTTCCCCCCCTTCCTCCTTCCCTTTCT
TTTCTCCCTTCCCCCTCCCTCCCTCTCTTTTTCCCCCTCCCTTTTTCCCC
TTACTCTTTCCTTTTCCTTTCTCCCCCCCTCCCCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATAGCTAAGAATTCATTGCATGAAGTAGGAAGTATAG
AACAAGGACTTACCTGAAAGATTGTCTATTGTGCCTGGAAACTTCCATAG
GATGGAAAATATGAGCTGTGGCCCCAGGTTAGCCTTTTGTTCTTTGACCC
CGTATGTTCCTTATCATATAAATTACAGTAAGAAATATAATTACTCATGT
TCCTGTACTTTAATAGAAGGCCAACTTTATAAACAATGCCTAGACTTACC
TGATGTATAAATAAAGCAGGTGTTTGTGAGAAAGTAATTTTTCCTTATTT
AAAATATACAAGCATATCCAACCCATGGCCTATGAGAAGTACTCTACCAT
AGATGGATACAGATGTGACCAAACAAAAAAATCATAAATTTATTTAAAAC
ATTACAGGGGGAGCTGATCTTTGCTTTGTTCTGTCATATTGTAAAAATGT
TGTATATATCATTTAGCATCACAACTCTTTACTGAATGTTTTGTCCTTTC
CTGAGAATAAATGCCACTGTTAATATATCTGGAATTCTTTATGAAGCCGA
CTTTTTGAACAAAAGCAATGGGGGTTGTTTGCTTGTTTGTTTATTTGTTC
AGTGCTTCTTCTCATTACTTACATTGTACTTCCACAGTGATGGACTGGGC
CACCAATGGTCCTAAGTTATGAAGTCTAGCAATGATGTGCCTGATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e04.g1 MSMg01no384_e04.g1 CHROMAT_FILE:
MSMg01no384_e04.g1 PHD_FILE: MSMg01no384_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:31 2005
         (573 letters)



>mm_chr18_18153251_18154223
          Length = 973

 Score =  903 bits (467), Expect = 0.0
 Identities = 488/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   taagaattcattgcatgaagtaggaagtatagaacaaggacttacctgaaagattgtcta 65
           |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 495 taagaattcactgcatgaagtaggaagtgtagaacaaggatttacctgaaagattgtcta 436

                                                                       
Query: 66  ttgtgcctggaaacttccataggatggaaaatatgagctgtggccccaggttagcctttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttgtgcctggaaacttccataggatggaaaatatgagctgtggccccaggttagcctttt 376

                                                                       
Query: 126 gttctttgaccccgtatgttccttatcatataaattacagtaagaaatataattactcat 185
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gttctttgactacttatgttccttatcatataaattacagtaagaaatataattactcat 316

                                                                       
Query: 186 gttcctgtactttaatagaaggccaactttataaacaatgcctagacttacctgatgtat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttcctgtactttaatagaaggccaactttataaacaatgcctagacttacctgatgtat 256

                                                                       
Query: 246 aaataaagcaggtgtttgtgagaaagtaatttttccttatttaaaatatacaagcatatc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaataaagcaggtgtttgtgagaaagtaatttttccttatttaaaatatacaagcatatc 196

                                                                       
Query: 306 caacccatggcctatgagaagtactctaccatagatggatacagatgtgaccaaacaaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caacccatggcctatgagaagtactctaccatagatggatacagatgtgaccaaacaaaa 136

                                                                       
Query: 366 aaatcataaatttatttaaaacattacagggggagctgatctttgctttgttctgtcata 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aaatcataaatttatttaaaacattacagggggagctgatctttgctttgttctgtcata 76

                                                                       
Query: 426 ttgtaaaaatgttgtatatatcatttagcatcacaactctttactgaatgttttgtcctt 485
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 75  ttgtaaaaatgttgtatatatcacttagcatcacaactctttactgaatgttttgtcctt 16

                          
Query: 486 tcctgagaataaatg 500
           |||||||||||||||
Sbjct: 15  tcctgagaataaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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