Query= MSMg01no384_n11.b1 MSMg01no384_n11.b1 CHROMAT_FILE:
MSMg01no384_n11.b1 PHD_FILE: MSMg01no384_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:14 2005
(539 letters)
>mm_chr18_39231843_39232781
Length = 939
Score = 1019 bits (527), Expect = 0.0
Identities = 533/535 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggagtattttcttactaaccaaagcaattaagattggttgccattgagaggta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagaattttcttactaaccaaagcaattaagattggttgccattgagaggta 264
Query: 65 ggtgtggactttgtttcctacctttgggtgagacaggttctcatttgagaaagcagaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgtggactttgtttcctacctttgggtgagacaggttctcatttgagaaagcagaaac 324
Query: 125 tccagaaacataaatacaaaggaaacactggacctcagatcaggcgaggccactgtgcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagaaacataaatacaaaggaaacactggacctcagatcaggcgaggccactgtgcct 384
Query: 185 cacgcctctctccttcaaagcatcactgtgtccttcttgtcttctagagaggtgaatggt 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacgcctctctccttcaaagcgtcactgtgtccttcttgtcttctagagaggtgaatggt 444
Query: 245 gcttgagaaggtctgtgtttttcaaacagttgcctgacaggtggcttttaaatattacgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttgagaaggtctgtgtttttcaaacagttgcctgacaggtggcttttaaatattacgt 504
Query: 305 gccatccatacggccaggaggagagggggcgccatccatacggccaggaggagagggggc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccatccatacggccaggaggagagggggcgccatccatacggccaggaggagagggggc 564
Query: 365 tgtttcctgctccggctagtaagtagctagaatagccacttacctccagagctgaccttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttcctgctccggctagtaagtagctagaatagccacttacctccagagctgaccttc 624
Query: 425 tgccccttcaggatttgaattctttctgcctctctggacacttgccccaacttagtgccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgccccttcaggatttgaattctttctgcctctctggacacttgccccaacttagtgccc 684
Query: 485 ctgaacagcagctcctcctctctgtgacaaactttcttgtgcttgtaaatatgac 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgaacagcagctcctcctctctgtgacaaactttcttgtgcttgtaaatatgac 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_n11.g1 MSMg01no384_n11.g1 CHROMAT_FILE:
MSMg01no384_n11.g1 PHD_FILE: MSMg01no384_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:14 2005
(527 letters)
>mm_chr18_39385144_39386072
Length = 929
Score = 1000 bits (517), Expect = 0.0
Identities = 525/529 (99%), Gaps = 4/529 (0%)
Strand = Plus / Minus
Query: 1 tgggagctgttgagacagactctgaacttggatggtttaagcagcaggcttgtgaacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgggagctgttgagacagactctgaacttggatggtttaagcagcaggcttgtgaacacg 588
Query: 61 gattccttcccagcacagacgaactttgtctgggacagagaccacttccttaccccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gattccttcccagcacagacgaactttgtctgggacagagaccacttccttaccccagaa 528
Query: 121 acaccaacaaaagtttgggaaaattggaaagaacttggcaactgagagagaaagtcccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acaccaacaaaagtttgggaaaattggaaagaacttggcaactgagagagaaagtcccgg 468
Query: 181 tgcttggatgacctaccaggtcagctaggaaataagggcagttcctaggcaagtgggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgcttggatgacctaccaggtcagctaggaaataagggcagttcctaggcaagtgggaca 408
Query: 241 tggaagggaaaactgcaaaggaactttccagatagctgagaggtaaacaaattctaccga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tggaagggaaaactgcaaaggaactttccagatagctgagaggtaaacaaattctaccga 348
Query: 301 ttt--atattaactgtaattttttttaatggcaaagaccccactgaatattcagattggt 358
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttttatattaactgtaattttttttaatggcaaagaccccactgaatattcagattggt 288
Query: 359 tttctctatgctggtgcaatttctctaatttgttaaaagcaagcaaacacccttcatact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttctctatgctggtgcaatttctctaatttgttaaaagcaagcaaacacccttcatact 228
Query: 419 gatattaaactaaaaagccttacagttcacacacacacacacacacacacacacacacac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gatattaaactaaaaagccttacagttcacacacacacacacacacacacacacacacac 168
Query: 479 acgttctatttatcagtgtatcttaactgtcaaatctacacagcattta 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 --gttctatttatcagtgtatcttaactgtcaaatctacacagcattta 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 929
Length adjustment: 10
Effective length of query: 517
Effective length of database: 919
Effective search space: 475123
Effective search space used: 475123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
