Query= MSMg01no384_o16.b1 MSMg01no384_o16.b1 CHROMAT_FILE:
MSMg01no384_o16.b1 PHD_FILE: MSMg01no384_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:20 2005
(222 letters)
>mm_chr18_16134462_16135087
Length = 626
Score = 410 bits (212), Expect = e-119
Identities = 221/226 (97%), Gaps = 4/226 (1%)
Strand = Plus / Minus
Query: 1 aaatagatgattgacagaagaaagataggtgacaattagatggttaaaagataaattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaatagatgattgacagaagaaagataggtgacaattagatggttaaaagataaattaat 367
Query: 61 caatcacaaatatatgtgattgatatattaatcttttgatagaatgaagggaatagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caatcacaaatatatgtgattgatatattaatcttttgatagaatgaagggaatagaaaa 307
Query: 121 acgatgatcgatagagaatacctgtaaatgtgtgatagatggaaaatggatagat----g 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 306 acgatgatcgatagagaatacctgtaaatgtgtgatagatagaaaatggatagatagatg 247
Query: 177 atagaaagatatattagttgatatagaggttagataaataacaaat 222
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atagaaagatatattagttgatatagaggttagataaataacaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 626
Length adjustment: 9
Effective length of query: 213
Effective length of database: 617
Effective search space: 131421
Effective search space used: 131421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no384_o16.g1 MSMg01no384_o16.g1 CHROMAT_FILE:
MSMg01no384_o16.g1 PHD_FILE: MSMg01no384_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:20 2005
(583 letters)
>mm_chr18_15957981_15958963
Length = 983
Score = 973 bits (503), Expect = 0.0
Identities = 563/583 (96%)
Strand = Plus / Plus
Query: 1 cacctaagaaagttgaaaaagttaaaaagtagaaaaagaaaatttatttctaggattgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacctaagaaagttgaaaaagttaaaaagtagaaaaagaaaatttatttataggattgcc 260
Query: 61 tccccctgccctatttcaatttaagctcaggtgacactttacttgcctcattagttatac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccctgccctatttcaatttaagctcaggtgacactttacttgcctcattagttatat 320
Query: 121 tagtatcttgagtaaaattgaaagactaatatttatgttatgtgataacaaatctcactt 180
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tagtttcttgagtaaaattgaaagactaatatttatgttaggtgataacaaatctcactt 380
Query: 181 agtgaatctgatatgtatttgttgtcaatgttcatatctatcattattggtctgcagatt 240
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 381 agtgaacctgatatgtatttgttgtcaatgttcatatttctcattattggtctgcagatt 440
Query: 241 aaggtgccatcccataatatggaatgaacacatttttgacattgactaaccttcatttcc 300
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 441 aaggtgccatcccataatatggaatgaacacatttttgacatcgattaaccttcatttct 500
Query: 301 ttttagaagagacttccatgtacctccaagagtgtagtcaagtcaaaggtgaaagagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttagaagagacttccatgtacctccaagagtgtagtcaagtcaaaggtgaaagagata 560
Query: 361 aacaacaggtatttaatggttatggaaaccggcatgtcaggtcttcgcacaatcaaactg 420
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 561 aaaaacaggtatttaatggttatggaaaccggcatgtcaggtcttcgcataatctaactg 620
Query: 421 gagattattttaggatatgcctctctaatatcggaaataaaaaagcatgaaacaggtctg 480
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gagattattataggatatgcctctctaatataggaaataaaaaagcatgaaacaggtctg 680
Query: 481 ggtaaacccaattgttcttctattatactttaaaactgactacgtacatataccatcaaa 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tgtaaacccaattgttcttctattatactttaaaactgactatgtacatataccatcaaa 740
Query: 541 tccagcttctactttcttggcatgctctgggagctttttcata 583
|||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 741 tccagcttctactttcctggcatgctctgggtggtttttcata 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
