BAC Information

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BAC

Clone NameMSMg01-386B20
Chromosome18 (Build37)
Map Location 61,394,731 - 61,395,411
singlet/doubletsinglet
Overlap genePde6a
Upstream geneEG240327, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2
Downstream geneEG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386B20.T7 (MSMg01no386_b20.b1)MSMg01-386B20.TJ (MSMg01no386_b20.g1)
ACCAG489157AG489158
length729725
length of high quality
(start - end)		685 (45 - 729)---
definitionCHROMAT_FILE: MSMg01no386_b20.b1 PHD_FILE: MSMg01no386_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:51 2005CHROMAT_FILE: MSMg01no386_b20.g1 PHD_FILE: MSMg01no386_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACACCGCGGA
ATTCAGGTCATTTGCCTCACATTGGCAAGTGCTTTTACCCTGGAACCATT
CTGCTGCCTAAGGGAGAGTTCTCTGTAAGACTGGATCCAGGTCCTCCGCT
GTCTCACAAACATCTCCGACTGCAAGTTTTCTTTATCTTAAAAGTGTGTT
TTGGAGCATGATGGTGCACACCTTAAATCCCAGCACTCTGGAAATAGAGG
CAGGTGGATCTCTGTGAGTTCGAAGCCAGCCTGCCTATAGTGTGAGTTCC
AGGATAGGCAGGGTTATACAAATAAACCCTGTCTCAACCCCTCCCTTGCA
AAAGTGTGTTTTGGTGAATAGAAATCTGAGTCATATAAATAATCACTTTT
TCTATGGCTGTTGACTTCTATGCCCTGTTTTAAGAAAATCTTTTCCAGAC
TCTAAGATCAGAAAAATATTTTACTTATGCCAATTCATGTAAGTTTTATT
TTTATGGATTTGACATGTAGCCTACAGTATAACAAAAATTTTAATGTATA
CTATGATACAAGATAAATATTACTACTCCATATAGACAACCAACCAACCA
AACCTGGGTTTGGTGTTTTGTGTTAAGAGTTCTTCACCAGGTATTAAATT
TCATGGACTTTCTTCCCATATTTTCCACCCTTTCATACTTAGGGGCTCCA
GTTTGAATATTTCTTCTCATGCCAGGCAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTACGAAAAATTCTCTGATTTTCATCTGGGTTTCTGCCCGACCA
GTGCTGGCCGTGCCTGCCGTCTATAAGCCCGAGACTATTACCCGGACTCC
TCTCTGACCGAATGCTCCTCCCTGCAGTCTCATGAAGTTGAGAGAAGGAG
TACGGAGATCTCGGAAGCGACTGTTTATAGAGAGAGGGCAGCGATGCTCA
AAGAGCCAGTGAAGGTTCTGGATGCGCTGCCCACCACCTTCCCAGAACTA
GCCTTCCCGTAGTCTTGTTGTGTAATGCCAAGACCAGATAATGGAAGACG
GAACCTGTTATGTAATAGCCTTTAAGGAGGGCTTGATTTATCCTCCTGCT
GATTGCTGCGGGGGCCCCCCCTCGCTAAGAGGAATCATCTCATTGGAGAC
TGTATGGCTCACTGTGTGAGGAACTAAATTCCGCTCCTGTCCTTTGCTGC
TCACGAGGCAACCGAATTATGCTGCAGAGGTACGCTGTTGTCCTCTGCGC
ACTCCCTGGCCCTTATCCTGACCTGATCCTGCAGGTTCTCTTATGAAGAC
TGCACGACTGCGCTGACCCTGGGCTCGTTATGACTCCCATTGAGCGTACT
TCTGATTGTAACGGNATACGCGCCCTCCTCTCGGTGGCTGGATCTTGCTG
AGGTCTTTGGCAGTTTGAACAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_b20.b1 MSMg01no386_b20.b1 CHROMAT_FILE:
MSMg01no386_b20.b1 PHD_FILE: MSMg01no386_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:51 2005
         (685 letters)



>mm_chr18_61394527_61395611
          Length = 1085

 Score = 1270 bits (657), Expect = 0.0
 Identities = 675/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtcatttgcctcacattggcaagtgcttttaccctggaaccattctgctgcc 64
           |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtcattgggctcacattgacaagtgcttttaccctggaaccattctgctgcc 264

                                                                       
Query: 65  taagggagagttctctgtaagactggatccaggtcctccgctgtctcacaaacatctccg 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagggagagttctctgtaagtctggatccaggtcctccgctgtctcacaaacatctccg 324

                                                                       
Query: 125 actgcaagttttctttatcttaaaagtgtgttttggagcatgatggtgcacaccttaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgcaagttttctttatcttaaaagtgtgttttggagcatgatggtgcacaccttaaat 384

                                                                       
Query: 185 cccagcactctggaaatagaggcaggtggatctctgtgagttcgaagccagcctgcctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagcactctggaaatagaggcaggtggatctctgtgagttcgaagccagcctgcctat 444

                                                                       
Query: 245 agtgtgagttccaggataggcagggttatacaaataaaccctgtctcaacccctcccttg 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 agtgtgagttccaggataggcagggttatacaaagaaaccctgtctcaacccctcccttg 504

                                                                       
Query: 305 caaaagtgtgttttggtgaatagaaatctgagtcatataaataatcactttttctatggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaaagtgtgttttggtgaatagaaatctgagtcatataaataatcactttttctatggc 564

                                                                       
Query: 365 tgttgacttctatgccctgttttaagaaaatcttttccagactctaagatcagaaaaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttgacttctatgccctgttttaagaaaatcttttccagactctaagatcagaaaaata 624

                                                                       
Query: 425 ttttacttatgccaattcatgtaagttttatttttatggatttgacatgtagcctacagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttacttatgccaattcatgtaagttttatttttatggatttgacatgtagcctacagt 684

                                                                       
Query: 485 ataacaaaaattttaatgtatactatgatacaagataaatattactactccatatagaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataacaaaaattttaatgtatactatgatacaagataaatattactactccatatagaca 744

                                                                       
Query: 545 accaaccaaccaaacctgggtttggtgttttgtgttaagagttcttcaccaggtattaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 accaaccaaccaaacctgggtttggtgttttgtgttaagagttcttcaccaggtattaaa 804

                                                                       
Query: 605 tttcatggactttcttcccatattttccaccctttcatacttaggggctccagtttgaat 664
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 tttcatggactttcttcccatattttctaccctttcatacttaggggctccagtttgaat 864

                                
Query: 665 atttcttctcatgccaggcag 685
           |||||||||||||||||||||
Sbjct: 865 atttcttctcatgccaggcag 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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