Query= MSMg01no388_j16.b1 MSMg01no388_j16.b1 CHROMAT_FILE:
MSMg01no388_j16.b1 PHD_FILE: MSMg01no388_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:58 2005
(546 letters)
>mm_chr18_28178351_28179298
Length = 948
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 33 ttctgaaaa-actggaatcatttcacgactctatttactcttttgcctatggcgaggaca 91
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttctgaaaatactggaatcatttcacgactctatttactcttttgcctatggcgaggaca 292
Query: 92 ctaagactaaatcaatataattcaaagcactctatcactgtgatgcatttctagccataa 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctaagcctaaatcaatataattcaaagcactctatcactgtgatgcatttctagccataa 352
Query: 152 tattcatacttttaaccacttcagtgagacaatgaggtcccgaaggcaggtggtatggtg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tattcatacttttaaccacttcagtgagacaatgaggtcccgaaggcaggtggtatggtg 412
Query: 212 ttctgaaatgagtttgggacaagaatggcttcgcagttggatgtttgttgtacaatactc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttctgaaatgagtttgggacaagaatggcttcgcagttggatgtttgttgtacaatactc 472
Query: 272 tatggaggtaaatttataccagtaatgtaatcagaactttcatttccccacttacaaaag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tatggaggtaaatttataccagtaatgtaatcagaactttcatttccccacttacaaaag 532
Query: 332 gagactatagctttataagacaaccaataagagttcatgtttgcaatgattcttattgtt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gagactatagctttataagacaaccaataagagttcatgtttgcaatgattcttattgtt 592
Query: 392 attctacagtatttttttt-aaaccaggaacgtacaaaagcaagtcatttaaatacaagt 450
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 attctacagtatttttttttaaaccaggaacgtacaaaagcaagtcatttaaatacaagt 652
Query: 451 gaactaaaccctaatccaatgtttactacagtgcacttgaatgccttcttcttaagcatg 510
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 653 gaactaaaccctaatccaatgtttgctacagtgcacttgaatgccttcttcttaagcatg 712
Query: 511 ccttttgcactgtgtgtgtatgtgtgtgtgtgtgtg 546
||||||||||||||||||| ||||||||||||||||
Sbjct: 713 ccttttgcactgtgtgtgtgtgtgtgtgtgtgtgtg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space: 502768
Effective search space used: 502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_j16.g1 MSMg01no388_j16.g1 CHROMAT_FILE:
MSMg01no388_j16.g1 PHD_FILE: MSMg01no388_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:58 2005
(569 letters)
>mm_chr18_28299788_28300756
Length = 969
Score = 1065 bits (551), Expect = 0.0
Identities = 564/569 (99%), Gaps = 2/569 (0%)
Strand = Plus / Minus
Query: 1 ctcagaaaggggatcataaagacctaaacaaaatagcaaattaaaaacctataaatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctcagaaaggggatcataaagacctaaacaaaatagcaaattaaaaacctataaatcaga 557
Query: 61 aggccatttttatgagaactagaatcaaaatatcatacttcaaaatgaaactaacataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggccatttttatgagaactagaatcaaaatatcatacttcaaaatgaaactaacataga 497
Query: 121 aaataggaacaagaatcaaataaaaactaaatgtaggcaaattatcaagcataagaaatg 180
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 496 aaataggaacaagaatcaaatgaaaactaaatgtaggaaaattatcaagcataagaaatg 437
Query: 181 gagttgcttggcaggggcctcatgggaagttctgcaacagtcaaggtaaaacctctggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagttgcttggcaggggcctcatgggaagttctgcaacagtcaaggtaaaacctctggac 377
Query: 241 aaaagagactggagtttcagaacactgagtataagcagagtactaagagttagtacacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaagagactggagtttcagaacactgagtataagcagagtactaagagttagtacacag 317
Query: 301 aagtactaagaatcagtacactaagatttagcagtatagcagtaccactttctccctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagtactaagaatcagtacactaagatttagcagtatagcagtaccactttctccctgga 257
Query: 361 aactgaaaataattgattattaatataattaagggctgctttcaaagtcctaatagaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aactgaaaataattgattattaatataattaagggctgctttcaaagtcctaatagaaat 197
Query: 421 ttattttcaattaataatattataaagacacatttaacagtgaagttgtaataaagatat 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 ttattttcaattaataatattataaagacacatttaatagtgaagttgtaataaagatat 137
Query: 481 tttaaacatgtaagatgacaatgctttctttccatatatctttcttaaatcatcacattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 136 tttaaacatgtaagatgacaatgctttctttccatatatctttcttaaatcatcaca--t 79
Query: 541 tttttttttttgcttgattgcttatgtgt 569
|||||||||||||||||||||||||||||
Sbjct: 78 tttttttttttgcttgattgcttatgtgt 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
