BAC Information

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BAC

Clone NameMSMg01-388N07
Chromosome18 (Build37)
Map Location 6,744,490 - 6,744,728
singlet/doubletsinglet
Overlap genenone
Upstream geneZeb1, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583
Downstream geneEG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388N07.T7 (MSMg01no388_n07.b1)MSMg01-388N07.TJ (MSMg01no388_n07.g1)
ACCAG491231AG491232
length743748
length of high quality
(start - end)
506 (63 - 568)239 (83 - 321)
definitionCHROMAT_FILE: MSMg01no388_n07.b1 PHD_FILE: MSMg01no388_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:15 2005CHROMAT_FILE: MSMg01no388_n07.g1 PHD_FILE: MSMg01no388_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATGTCGCTATACGAATCACTACTCCGAGAGGATCCGCGGAATTCTC
ACCCGTGCCAAACCGAAAGGCTGAGAAACACCTGAAAAAATGTTCAACAT
CTTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGGGAAAGAGGAACACTCCTCCATTGTTGGTTGGATTGCA
AACTGGTACAACCACTCTGGAAATCAGGCTGGTGGTTCCCCGAAAATTGG
ACATAGTACCACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAA
CAGAGGAATGGATACAAAAATTGTGGCACATTTACACAATGAAGTACTAC
TCAGCTATTANNAAGAATGAATTCACGAAATTCCTAGCCAAATGGATCTA
CCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAA
ATGAAATGTACTCACTGATAAGTGGATATTAACCCCGAAACTTAGTATAG
CGAGATATAAGGACCACATGTAAAACCTGAAACTGGAAAAAACGAAAAAC
CAAGGTGGACAATTTCTCCTCCTAAAATTGTAACAACCCCCCG
NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATACAGAGCTTTGGA
GGACTCTTGAAGCTGGCAGGTAAAAAACTGAGAGAAATTGCTGAGTCTTT
GGCAGCTCTTCAGAGCTATGTGAGTGGGAGCAGATAGCTTCTTGTTTGGT
AAAGTGACAAACAGGCCTTCCAATGTGCAGATGTAGATCCAGCATGAGGA
GAAATTGGCAAGCCACTCCCTTGTCCTATACCTCCTAAAAGGGAAAGGAC
CTGGGCATCAGGGAAGAAAACATTTTTTTAAGAGGCAGGGGATGGAAGTG
CTGGTGGTGGATTTGAGCCAAGGAGCAAGATGCTCAGAATTGAGAATACA
TCCTGAAGATGTCCTGGCCACCCCACTTCTAGGAAAATGATTGTGTTCAG
TGGGGTTTTATGCAGCTGTAAAAAAAAAAAAAAATAATGAAATCCTGTCA
ATTTTTAGCCCCAAGCTTGGGCATTTGTCACATCTCTCTTCTAGAAGTTA
ACCAGGGTTCCATGAGGACAAAATCAATTTCTTTCAAGTGCTATGTCTTT
GATGACTAACAGTAATGCAGACCATATCCCACCTTTTAAAGTCAGACACC
AGAGGTCAATGCTGCCGCCCTGCAGACCTAGCTTCATGAGAACCTTTCTG
AAGCTCCTGAACTATAATAGCCTATCCTCCCAGTTGTGCGATTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_n07.g1 MSMg01no388_n07.g1 CHROMAT_FILE:
MSMg01no388_n07.g1 PHD_FILE: MSMg01no388_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:15 2005
         (239 letters)



>mm_chr18_6744290_6744928
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatacagagctttggaggactcttgaagctggcaggtaaaaaactgagagaaattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatatacagagctttggaggactcttgaagctggcaggtaaaaaactgagagaaattgct 380

                                                                       
Query: 61  gagtctttggcagctcttcagagctatgtgagtgggagcagatagcttcttgtttggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagtctttggcagctcttcagagctatgtgagtgggagcagatagcttcttgtttggtaa 320

                                                                       
Query: 121 agtgacaaacaggccttccaatgtgcagatgtagatccagcatgaggagaaattggcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgacaaacaggccttccaatgtgcagatgtagatccagcatgaggagaaattggcaag 260

                                                                      
Query: 181 ccactcccttgtcctatacctcctaaaagggaaaggacctgggcatcagggaagaaaac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccactcccttgtcctatacctcctaaaagggaaaggacctgggcatcagggaagaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)