NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGCTTACACCTGTACCCCAACCACATGCTCATCTTATT
AGATGCTGAAAAATACACTGAAAAAAATCTAACACACATTCATTATAAAA
TTCTTGGAGATATCAGGACTACAAAGAGCATACTTTAGCATAATAAAAAC
AACATAAAACAAGCCAATAACCAAAATCAAATGAAATGAAGAGAAACTTA
AAGCAATTCTACCTAAATTAAAGCAATTCTACCTAAATTAGGGACAAGGC
AAAGTTTGTCTTTCTCTGAGTCTATTCAATATAGTACTTGATTTAGTTAG
AACAATAAGACAACTAAAGGACATCATGGGGATAGAAATTGGAAAGGAAC
AAGTCAAATTATCACTATTAAAAGATGATATGATAGAAACATAGAAGAGC
CCAAAAATTCTACCAGAGAATTTCTACAGCTGATATACCTCTAGCAAAGT
GGCTAGATACATGATTAAGTCTCAAAATAATCAATAGCCCTCCTTTACAC
AAATTATAAATGAGCTGAGAATGAAATTTTGGAAAAAATACCCTTCAACA
TAGCCACCAAAATATAAAATATCCCAGTGTAACTCCAACTAAGCAAGTAA
AAAACCTGTATGCCAAAAACTTCAAGCCTTTGAAAGCAGAACATTAAGAA
GGTATCGCAAGATAAAATATCTCCGGGGCCCCAGGGGGGCAGGATAACCT
AGTGAAAAGGGCCG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAACCCACCCAGAG
ATGGTAACACCCACAAGGGACATTGCACTCTTGATCACTAATTAAGAAAA
TGCTTTACAGCTGGATCTCATGGAGGCATTTTCTCACCTGAAGCTCCTTT
CTGTGTGATAACTCCAGCTTGTGTCAAGTTGACACAAAAACCAGCCAGTA
CACTACCCCAAGGCTATAACATACTATATCTGCATTTATTTGATTATTTT
GTAGACAAAATTTTCATGAATATTTTTCCTATAAAACTGTTAAATATGCA
CATACATACATAAACTCTCACATATACATATATGGACATTCATGTCTGAA
TATACATATTTGCATTAGTAGATATAGAATGTGTAAAAACATGTATATAT
ACATGTACACTTGTGCACACACACATACACACACATATAATATATATATA
TACACATTCATACATGTATACAATATTTCACACATTTACATATACACATA
TATAATATATATGTACATATATTTATACATGTGCACACCTACATTTCTAG
AGAGAGAAAAATATAATGAACATCTCAAACAAATAAAATAAGCCAATATC
CACACATTTTCCGGAATTTAAGGTCACCAGGATGTAATAATCTGGTGTCC
CAAAATAAGGAGAATATTTTCAACCCACTCCACCTTTGCACTGAG

Query= MSMg01no389_h04.g1 MSMg01no389_h04.g1 CHROMAT_FILE:
MSMg01no389_h04.g1 PHD_FILE: MSMg01no389_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
         (500 letters)



>mm_chr18_87143106_87144005
          Length = 900

 Score =  851 bits (440), Expect = 0.0
 Identities = 493/530 (93%), Gaps = 30/530 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacaacccacccagagatggtaacacccacaagggacattgcactcttgatcactaat 60
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 726 aagacaacccacccagagatggtaacacccacaagggacattcccctcttgatcactaat 667

                                                                       
Query: 61  taagaaaatgctttacagctggatctcatggaggcattttctcacctgaagctcctttct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 666 taagaaaatgctttacagctggatctcatggaggcatttcctcacctgaagctcctttct 607

                                                                       
Query: 121 gtgtgataactccagcttgtgtcaagttgacacaaaaaccagccagtacactaccccaag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 606 gtgtgataactccagcttgtgtcaagttgacaaaaaaaccagccagtacactaccccaag 547

                                                                       
Query: 181 gctataacatactatatctgcatttatttgattattttgtagacaaaattttcatgaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gctataacatactatatctgcatttatttgattattttgtagacaaaattttcatgaata 487

                                                                       
Query: 241 tttttcctataaaactgttaaatatgcacatacatacataaactctcacatatacatata 300
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 486 tttttcctataaaactggtaaatatgcacatatatacataaactctcacatatacatata 427

                                                                       
Query: 301 tggacattcatgtctgaatatacatatttgcattagtagatatagaatgtgtaaaaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggacattcatgtctgaatatacatatttgcattagtagatatagaatgtgtaaaaacat 367

                                                                       
Query: 361 gtatatatacatgtacacttgtgcacacacacatacacacacatataatatatatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtatatatacatgtacacttgtgcacacacacatacacacacatataatatatatatata 307

                                                                       
Query: 421 ca------------------------------cattcatacatgtatacaatatttcaca 450
            |                              ||||||||||||||||||||||||||||
Sbjct: 306 tatatatatatatatatatatatatatatatacattcatacatgtatacaatatttcaca 247

                                                             
Query: 451 catttacatatacacatatataatatatatgtacatatatttatacatgt 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catttacatatacacatatataatatatatgtacatatatttatacatgt 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)