Query= MSMg01no389_l02.b1 MSMg01no389_l02.b1 CHROMAT_FILE:
MSMg01no389_l02.b1 PHD_FILE: MSMg01no389_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:23 2005
(476 letters)
>mm_chr18_55633467_55634342
Length = 876
Score = 870 bits (450), Expect = 0.0
Identities = 466/476 (97%), Gaps = 8/476 (1%)
Strand = Plus / Plus
Query: 1 aaagactgtctcaaaacaaaaacaacaaacaaacaaacaaacaaacaaaaaaacaaaccc 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 209 aaagactgtctcaaaacaaaaac--------aacaaacaaacaaacaaaaaaacaaaccc 260
Query: 61 acaaacaaacaaagaaaacagaccaaaaaagccaaaaacaaaaacaacaaaaccccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacaaacaaagaaaacagaccaaaaaagccaaaaacaaaaacaacaaaaccccagaa 320
Query: 121 tttaatctccttgagtatttcctgctgtaattctggatagataactacttgatagtgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatctccttgagtatttcctgctgtaattctggatagataactacttgatagtgttc 380
Query: 181 accagcttattaatcactattggcatttagtggaagaggagataaaatatgcacacatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagcttattaatcactattggcatttagtggaagaggagataaaatatgcacacatac 440
Query: 241 acacccatatattattaaacactgtagattttaagatgcagatatggattttatcttgtt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 acacccatatattattaaacactgtagattttaagatgcagatatcgattttatcttgtt 500
Query: 301 aatgatttatatattaatatttggagatggcactctgacaaataagcaggtacgtaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgatttatatattaatatttggagatggcactctgacaaataagcaggtacgtaaaga 560
Query: 361 cattcgtacctaatctgaaattcctcactgacacaacttaatttcaagtgttctttttgg 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 cattcgtacctaatctgaaattcctcgctgacacaacttaatttcaagtgttctttttgg 620
Query: 421 aggtatgcaaaagaatgccatactttagacctatttgacatgtgttatttctgtgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtatgcaaaagaatgccatactttagacctatttgacatgtgttatttctgtgg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_l02.g1 MSMg01no389_l02.g1 CHROMAT_FILE:
MSMg01no389_l02.g1 PHD_FILE: MSMg01no389_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:23 2005
(546 letters)
>mm_chr18_55787847_55788792
Length = 946
Score = 1056 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Minus
Query: 1 ttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaaggcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaaggcaaat 781
Query: 61 taataaaaaatacattattattaaaatttttaatcttggagatgttgagggctcttgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 taataaaaaatacattattattaaaatttttaatcttggagatgttgagggctcttgagt 721
Query: 121 gattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaagaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaagaagaa 661
Query: 181 aaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgtaggttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgtaggttgg 601
Query: 241 tgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatgagctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatgagctaa 541
Query: 301 tgatgagactgggaaactataaaaataagaggcttacttagctcacattttgggagactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgatgagactgggaaactataaaaataagaggcttacttagctcacattttgggagactg 481
Query: 361 aaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcactgggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcactgggac 421
Query: 421 agtgccaccgtcatggcaggagtatgtgcaagacgacatcacatgatcagacgaaaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtgccaccgtcatggcaggagtatgtgcaagacgacatcacatgatcagacgaaaatcc 361
Query: 481 aatggaggagggcagtagccaggcttctcttttatgtccacacttgcataagaactactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatggaggagggcagtagccaggcttctcttttatgtccacacttgcataagaactactt 301
Query: 541 cgtggt 546
||||||
Sbjct: 300 cgtggt 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
