Query= MSMg01no391_l04.b1 MSMg01no391_l04.b1 CHROMAT_FILE:
MSMg01no391_l04.b1 PHD_FILE: MSMg01no391_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:00 2005
(491 letters)
>mm_chr18_85875539_85876429
Length = 891
Score = 843 bits (436), Expect = 0.0
Identities = 475/490 (96%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 6 gaattccatgttcattttcagagaatcaaatatgtcataaaaataaattcttgtataaca 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattccatgttcagtttcagagaatcaaatatgtcataaaaataaattcttgtataaca 513
Query: 66 tcaagacagtgggctccccgggttataaagtaataaatgtgtgtcattttaaatcacaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcaagacagtgggctccccgggttataaagtaataaatgtgtgtcattttaaatcacaga 453
Query: 126 aagtgtgcttatttgttgtcaaagaaatagactaatgcccctcctcttccatcttgccta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagtgtgcttatttgttgtcaaagaaatagactaatgcccctcctcttccatcttgccta 393
Query: 186 aggtatatactatgtaatttgctcatgaaatggctgatttggaggtggctgcaatctgtt 245
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aggtatataatatgtaatttgctcatgaaatggctgatttggaggtggctgcaatctgtt 333
Query: 246 cagaatatgaaagagaagagcaaaggtctccaggaggacatctaaatttttccatgttct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagaatatgaaagagaagagcaaaggtctccaggaggacatctaaatttttccatgttct 273
Query: 306 ctggtccttggatttagcattctatctacccatcctacagactaagctatctttcccagt 365
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 272 ctggtccttggatttagcattctatcttcccatcctacagactaagctgtgtttcccagt 213
Query: 366 gtgacactctttttttc-ctttttttt--aattacgtattttcctcaattatatttccaa 422
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 212 gtgacactctttttttttcttttttttttaattacgtattttcctcaattacatttccaa 153
Query: 423 tgctatcccaaaagtcc-cccccctctccccccccccactcccctacccacccattccca 481
||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct: 152 tgctatcccaaaagtcctcccccctc---ccccccccaatcccctacccacccattccca 96
Query: 482 ttttttggcc 491
||||||||||
Sbjct: 95 ttttttggcc 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_l04.g1 MSMg01no391_l04.g1 CHROMAT_FILE:
MSMg01no391_l04.g1 PHD_FILE: MSMg01no391_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:00 2005
(518 letters)
>mm_chr18_85712407_85713324
Length = 918
Score = 957 bits (495), Expect = 0.0
Identities = 512/518 (98%)
Strand = Plus / Plus
Query: 1 tactcccaaggtgataagtggaacttcaccttctctatactgcggctataactggaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactcccaaggtgataagtggaacttcaccttctctatactgcggctataactggaaaca 260
Query: 61 ggttatgcagttttacctagttagaatttgactgtttcagctgtccctacaaggaacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttatgcagttttacctagttagaatttgactgtttcagctgtccctacaaggaacatg 320
Query: 121 aactgtgagagcagagacactcacagaaaagtgcactactcagagtgtcaaatggagtga 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtgagagtagagacactcacagaaaagtgcactactcagagtgtcaaatggagtga 380
Query: 181 cacatttgtaagccaaggaatacagagcacagcacagagggaacactcagaagcagaaaa 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cacatttgtaagccgaggaatacagagcacagcacagagggaactctcagaagcagaaaa 440
Query: 241 gagagatcttgccttccaacttctgcaaagagctttgccctacaccatcttgaatgtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagatcttgccttccaacttctgcaaagagctttgccctacaccatcttgaatgtgga 500
Query: 301 cttctatcacatccacaagacttaatttttgtgattgcaggtagcccagctgaaaattga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctatcacatccacaagacttaatttttgtgattgcaggtagcccagctgaaaattga 560
Query: 361 atcttcagcaacaataaagagaattacaatattgatatgatccaaggtcaccaataacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 561 atcttcagcaacaataaagagaattacaatattgatatgatccaaggtcaccaattagct 620
Query: 421 tcatcttaccttanatattgcctttataataaagttatatgagatacaataaatttaaca 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatcttaccttaaatattgcctttataataaagttatatgagatacaataaatttaaca 680
Query: 481 ttgttggcattaagttgttgcgggaaattggcaggcaa 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgttggcattaagttgttgcgggaaattggcaggcaa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
