Query= MSMg01no391_m01.b1 MSMg01no391_m01.b1 CHROMAT_FILE:
MSMg01no391_m01.b1 PHD_FILE: MSMg01no391_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:04 2005
(369 letters)
>mm_chr18_17809393_17810163
Length = 771
Score = 659 bits (341), Expect = 0.0
Identities = 363/371 (97%), Gaps = 2/371 (0%)
Strand = Plus / Plus
Query: 1 actattgaaaatgagactgtgtaaaatgcaatttgactttcaattgtattaaattaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actattgaaaatgagactgtgtaaaatgcaatttgactttcaattgtattaaattaaatt 260
Query: 61 tcattgagaggaaggtaattgcaaaatgaaaaaaaatgttttaaaagcatctgaggcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tcattgagaggaaggtaattgcaaaatgaaaaaaaatgttttaaaagcatctgaggcgta 320
Query: 121 tatcagacatgggacctggctatcatt--aaaaaaaaaaaaagtcaatgagaggccgttt 178
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 321 tatcagacatgggacctggctatcattaaaaaaaaaaaaaaagtcgatgagaggccgttt 380
Query: 179 agggatttcccattgctcagctctgagaagggaatgtagttcatttgagtctgatttatg 238
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 381 agggatttcccattgctcagctctgaggagggaatgtagttcatttgagtctgatttacg 440
Query: 239 ttattctaataggtagtgcagattttaatagaattcagctgtggcattactgggccgaaa 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattctaagaggtagtgcagattttaatagaattcagctgtggcattactgggccgaaa 500
Query: 299 gcagttgggaaggcccatgggaaagaaaagtattttagtcaggagagtgtctagaaatct 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagttgggaaggccaatgggaaagaaaagtattttagtcaggagagtgtctagaaatct 560
Query: 359 cgatgaggcaa 369
|||||||||||
Sbjct: 561 cgatgaggcaa 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 771
Length adjustment: 9
Effective length of query: 360
Effective length of database: 762
Effective search space: 274320
Effective search space used: 274320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_m01.g1 MSMg01no391_m01.g1 CHROMAT_FILE:
MSMg01no391_m01.g1 PHD_FILE: MSMg01no391_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:04 2005
(444 letters)
>mm_chr18_18024550_18025393
Length = 844
Score = 835 bits (432), Expect = 0.0
Identities = 441/444 (99%)
Strand = Plus / Minus
Query: 1 tgttttcctgagaatgagacaaatacagtgaaattctgttatcgtaaagccatatagaga 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 644 tgttttcctgagaatgagacaaatacagtggaattctgttatcgtaaagccatatagaga 585
Query: 61 acacaatgaaaaaaggacattaagtgtgtggggtgaagagagtaaatgaccagactgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acacaatgaaaaaaggacattaagtgtgtggggtgaagagagtaaatgaccagactgtat 525
Query: 121 gtatatcagtaggtaataatatcaaaattattcactcagtatactatgtcctaaaaggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtatatcagtaggtaataatatcaaaattattcactcagtatactatgtcctaaaaggta 465
Query: 181 aatcgttgaaatttaaaactatggatgaatgaccagctgtagtaacctgatagacatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatcgttgaaatttaaaactatggatgaatgaccagctgtagtaacctgatagacatcat 405
Query: 241 tggtgagttgttaagaaacaatgtatttacctatataaatgctgatactattcctgaaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggtgagttggtaagaaacaatgtatttacctatataaatgctgatactattcctgaaaa 345
Query: 301 ggctatgttcagaactgattcatttggtttgtactttctaaagagtcagttctatgagat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 344 ggctatgttcagaactgattcatttggtttgtactttctaaagagtcagttctatgagct 285
Query: 361 acaaagatgttgagaagaatataaacattttttggtatttttgctaaagcagcctgactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acaaagatgttgagaagaatataaacattttttggtatttttgctaaagcagcctgactt 225
Query: 421 gtctcatttattgtcaactcaata 444
||||||||||||||||||||||||
Sbjct: 224 gtctcatttattgtcaactcaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
