BAC Information

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BAC

Clone NameMSMg01-393B08
Chromosome18 (Build37)
Map Location 59,807,386 - 59,807,659
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393B08.T7 (MSMg01no393_b08.b1)MSMg01-393B08.TJ (MSMg01no393_b08.g1)
ACCAG494466AG494467
length843780
length of high quality
(start - end)		159 (33 - 191)449 (62 - 510)
definitionCHROMAT_FILE: MSMg01no393_b08.b1 PHD_FILE: MSMg01no393_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:52 2005CHROMAT_FILE: MSMg01no393_b08.g1 PHD_FILE: MSMg01no393_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAGCTT
TTGACCTCTCCCAAGGAGAGGCTGTTGCAATCCAGAGGAAACAACTATAG
GAGCATAAATTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAG
TGGGAGTGGGTGGGTAGGGGAGTCAGGGGGAGGGTATGGNNNANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNTNTTN
NCCCCCCCCCCCCCNCNNCCCCCCCCCCCCCCCCNCCCCCTCCCTNCTCT
TTTTTTCTTTTCTTTTCTTTCTCCTTCTCTCTTCTTTTTTTCCCCCTCTC
TCTCCTTTTCCCCCTCTTTTTCCCTTTCTTTTCCTCCCTTCTTCTCTCCT
CCTCCTTTTCTTTTTTCCTTCCTCCTCCTTCTTTCTCCCTCCTTCCCTTT
CCCTCTTCTTCTTTCTCCTTTTTCCCTCTCTTCTTTCTTCCTCCCCTTCT
CCTCCCGCTTTTTCCTCTCCCCTTTTTTCTTTTTTTTCGTTCCTCCCTTT
CTCTCTTTTCCCCCTTCCTCTTNTTCCGCCTTCTCTTTTTTCTCCTCCTC
TTCTCCTTTCTTCCTTCTTTTCTCTCNCCTTCTCTCGTCTCTTTTTCCTT
TTTCCCGTTCTTTCTCTTTGGTTCTCCTTTCTCCCTTTTCTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGGGAGAGAGGAGGTAGTGCTGGCCTGACACTGCCATCCT
CAGGCTTACAAGAAAGATGGCAAGCATGGGTATTAGGACAGCCATACCAA
CCATCCATGCATCCCTAAACCCTGACAAATGCACTGCAGACAGTCTGATA
TGTGGGGATATCAGTAGATGCTCAAAGCTATTAAGCTACTAAGTAGGAGG
CTGGTTTTTAATATTCTGTAGATTATGTTAAATTTCAAAACCACTTAAAA
AATTTCATACCACTGCATGGTAAAAGTGGTGGGAGGTAAAAATCAGAGAG
CTATCAAGGTCGGCACCAGGCAGAAAAGGCCTGATAGAAAGATCACATTT
TCTCCAAATAAGAAGTAAGGGAGGGACAAGACGGGCAAAGCAGACAAAGA
AGTGGAGGTAGGCAGGGCAGGGGTCACTAAATAACACTGGTATATTTGAA
AAGCCCTCAGAAGATCTGCTATTTTATTAATGTTCTTTAAAAATGCATAC
ATAAAAAACAGCTTAATTGTAATTACTCCAAACTGGAGATAGATAATGCT
TCTCCCGACAACCACTTACTATCAAATAGAAACCCCCGAAGCCCACCTGA
GATTATCCTCCTCCCGTTGTTTGGAAGTGAGGTCCATAAAAACTCCCCAA
TAACAGGAATTTCCCATTGGTTTTGTGTTTTTGCCACAAATTTAGTTGAA
AAAATAATGGTGTAAATACCTTCTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_b08.g1 MSMg01no393_b08.g1 CHROMAT_FILE:
MSMg01no393_b08.g1 PHD_FILE: MSMg01no393_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:52 2005
         (449 letters)



>mm_chr18_59807186_59808030
          Length = 845

 Score =  495 bits (256), Expect = e-144
 Identities = 271/278 (97%), Gaps = 4/278 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagagaggaggtagtgctggcctgacactgccatcctcaggcttacaagaaagatggc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagagaggaggtagtgctggccttacactgccatcctcaggcttacaagaaagatggc 260

                                                                       
Query: 61  aagcatgggtattaggacagccataccaaccatccatgcatccctaaaccctgacaaatg 120
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 a----tgggtattaggacagccataccaaccatccatgcatccctaaaccctgacaaatg 316

                                                                       
Query: 121 cactgcagacagtctgatatgtggggatatcagtagatgctcaaagctattaagctacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactgcagacagtctgatatgtggggatatcagtagatgctcaaagctattaagctacta 376

                                                                       
Query: 181 agtaggaggctggtttttaatattctgtagattatgttaaatttcaaaaccacttaaaaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 377 agtaggaggctggtttttaatattctgtaggttatgttaaatttcaaaaccacttaaaaa 436

                                                 
Query: 241 atttcataccactgcatggtaaaagtggtgggaggtaa 278
            |||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttttcataccactgcatggtaaaagtggtgggaggtaa 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 845
Length adjustment: 10
Effective length of query: 439
Effective length of database: 835
Effective search space:   366565
Effective search space used:   366565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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