BAC Information

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BAC

Clone NameMSMg01-395F08
Chromosome18 (Build37)
Map Location 28,635,428 - 28,635,600
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665646, EG271505, EG625997
Downstream geneBC051408, LOC100040930, 4930578E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395F08.T7 (MSMg01no395_f08.b1)MSMg01-395F08.TJ (MSMg01no395_f08.g1)
ACCAG496177AG496178
length775775
length of high quality
(start - end)
418 (50 - 467)171 (206 - 376)
definitionCHROMAT_FILE: MSMg01no395_f08.b1 PHD_FILE: MSMg01no395_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:09 2005CHROMAT_FILE: MSMg01no395_f08.g1 PHD_FILE: MSMg01no395_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAAAGTTGATAAACAGCTTTGGTGAAGTAGCTGGATATAA
AATTAACTCAAACAAGGCAATGGCCTTTCTCTACACAAAGTATAAACAGG
CTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAAT
ATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGA
TAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGAT
GGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATG
GGTATCTTGCCAAAAGCAATCTACAGATTCAATGCAACCCCCATCAAAAT
TCCAACTCAATTCTTCGATGAATTAAAAGGAGCAATCTGCAAATTCATCT
GGAATAACAAAAAACCTAGAATAGCAAAAACTGTTCTCAAGGATAAAAGA
ACCTCTGGTGGAATCACCATGCCTGACCGTAAGCTTTACTACAGAGCAAG
TGTGATAAAAACTGCATGGTACTGGTATACTGACAGACCAGTAGACCAAT
GGAATAGAAATTGAAGACCCCGAAATGGACCCCCCCCCCCTATGGGGCCC
TTGATCTTCCCCAAGGGAACTAAAAACTTCCAGTGGGAAAAAAGAAACAT
TTTTAAAACAGGGGGGGGGGCCAACTGGGGGTTTTCTGGGAAAAAAGGGG
AACCATCCCTACCCAATCCTTTTGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGCATTTTCTTTGTGAG
AAATTAAGAGGAATCACAATATAATGTGTTGACATTTGAAATTCTGTACA
GAAAAGTTTAGGCTGCCAATTTAGCTTAATCACAAGCTAACAGGGAAAGG
CTGTTTATTAAATTAGTTTCTTGTTCATGAAATGTGCATTTTATTTGTAA
ATCTTTGCCTCTGCACCTAGGTTTATTTTTTTAACCCTAGTCTTTATAAA
TCTCGAAAGATCAAAAGTTATGTTTTCATAGAAAATACTTCATTGCCTGA
CCTCTATTTTAAACGTCAAAACTGTCTATACTAGCAACCATGCTGAAGAG
AGACCCTCTGAAGAAGTGAAAACAAAAACAAGTGGCAAGTTACCATTAAG
AGAAGCCACCAAGGTATATATTTCTTTCTCTGGCATTAAACCACTATGGC
AGCAACATGCATGAGAAAGATTCTTCATATGATTAAATTAAAGCTATACA
TTTTGCTTATTTGCTCACGTCTCCAACGGAGTAACGGTGTCCGCCTCCGT
CCCTCCTTATTTCCAATTCATTGGCTTTAGGGAAATGGGAAAACGGTAAC
CAAATTGCGCTTTTGGTTTTCTCTGGGCGGGGCCGGTATTCCAAACGTAC
CTCAAGAACTTGTAAAAAAAACACGAAAAACGTCCGGGCCTTTTTTTTCC
CCTAAAAGAACGGGGCGGGCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_f08.g1 MSMg01no395_f08.g1 CHROMAT_FILE:
MSMg01no395_f08.g1 PHD_FILE: MSMg01no395_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:09 2005
         (171 letters)



>mm_chr18_28635228_28635800
          Length = 573

 Score =  315 bits (163), Expect = 8e-91
 Identities = 170/173 (98%), Gaps = 2/173 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaaattagtttcttgttcatgaaatgtgcattttatttgtaaatctttgcctctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaaattagtttcttgttcatgaaatgtgcattttatttgtaaatctttgcctctgca 260

                                                                       
Query: 61  cctaggtttat--ttttttaaccctagtctttataaatctcgaaagatcaaaagttatgt 118
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaggtttatatttttttaaccctagtctttataaatctcgaaagatcaaaagttatgt 320

                                                                
Query: 119 tttcatagaaaatacttcattgcctgacctctattttaaacgtcaaaactgtc 171
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tttcatagaaaatacttcattgcctgtcctctattttaaacgtcaaaactgtc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 573
Length adjustment: 8
Effective length of query: 163
Effective length of database: 565
Effective search space:    92095
Effective search space used:    92095
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)