BAC Information

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BAC

Clone NameMSMg01-396F18
Chromosome18 (Build37)
Map Location 26,462,173 - 26,462,664
singlet/doubletsinglet
Overlap genenone
Upstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F18.T7 (MSMg01no396_f18.b1)MSMg01-396F18.TJ (MSMg01no396_f18.g1)
ACCAG496956AG496957
length771748
length of high quality
(start - end)
437 (38 - 474)492 (66 - 557)
definitionCHROMAT_FILE: MSMg01no396_f18.b1 PHD_FILE: MSMg01no396_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:27 2005CHROMAT_FILE: MSMg01no396_f18.g1 PHD_FILE: MSMg01no396_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATGTATG
CTTTGAGCTTTACTAAAGTGTCTCTAATGAAAGTGGCTGCCCTTGCATTT
GGTGCGTAGATATTCAGAATTGAGAGTTCCTCTTGGAGGATTTTACCTTT
GATGAGTATGAAGTGTCCCTCCTTGTCTTTTTTGATAACTTTGGGTTGGA
AGTCGATTTTATCCGATATTAAAATGGCTACTCCAGCTTGTTTCTTCAGT
CCATTTGCTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGTGTCT
GTCTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCAGAATGTTGGGTCCT
GTTTGTGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGT
CCATTGATATTAAGAGATATTAAGGAAAAGTAATTGTTGCTCCCTTTTAT
TTTTGTTGTTAGAGTTGGCATTCTGTTCTTGTGCCTGTCTTTTTTTTGGT
TTGAAGAATGAATACTTTCTTTGGTTGTTCTAAGGCGGCGATTCCCGTCC
CTGGATTGCTTCTTTTTTTGTCCTATCATTTGAAAGGTTGGATTTCTTTA
AAAACACTGGGTGTACCTTTTCTTTCGTGGGAAAACATTCCCTTTTTCCT
TCCCTTTCCTTCCAATCCCTTCCCTTTTATTACCCTTTTCCTCCTTTCCT
CCTTTTCCCCTTTCTTTTATTCCCTATTTTTCTCCTTCTATTTTTCTACC
TTCCCTTTCTTTTCCNCCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGAGGACCAAATTGTATGCGTCCTCACATGAATCT
TTCTCCCAGGGACTACATAGCCAAATGGCATTTATAATTTGTCCCCTGGT
GTTTCAGAAGGCTTAGTGGCTCTTTAATGGATAATTGCTGCAGAAATTAC
TTTTGTTTCTTACAACCACCATTTGAAAAGTCAAATTTAGAGAGTAGAAT
GCCTGTCTGCTCGCAGAAATGTCTTCCTTTTACTCAAGAAAATCCAGGCT
CTTAGTTCTTTCCACCTGTGCCTGGATATATGCCCTCTCTCACTAATAAA
AATGATTGAAAAGCACCTTGAAAATATGAAGTGTTATATAAATGCTAACT
GAGGCAATAATAAAACAGTAATAATAACTATTTGCAGATAAACGTCACTT
TCAAGCCCAGGGGAGACGTTTTGCAGGAGGGAAGCAGAACAGGTCCCGTA
TGTATCCCTGGGCCATGCTTCACTGTGAATCACACCCTTCTCCTTCCATT
TGGATAGAGCCATTCACCATAGTCATGAAATAGTACTGGTATGTAAAACG
ATTGTCATCACCCCCAGCGTAAACTGCAATGTGTTGCCCAGCCCTCCATT
CTCTGACAAGTGCCAGGGGGACTTTACTGGGAAAGATCATTTATAAAATA
ATGGATTATAGCCTCAATGCTGGGAATAATTCCCTCCTCTGGGCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f18.g1 MSMg01no396_f18.g1 CHROMAT_FILE:
MSMg01no396_f18.g1 PHD_FILE: MSMg01no396_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:28 2005
         (492 letters)



>mm_chr18_26461973_26462864
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggaccaaattgtatgcgtcctcacatgaatctttctcccagggactacatagccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggaccaaattgtatgcgtcctcacatgaatctttctcccagggactacatagccaaa 260

                                                                       
Query: 61  tggcatttataatttgtcccctggtgtttcagaaggcttagtggctctttaatggataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcatttataatttgtcccctggtgtttcagaaggcttagtggctctttaatggataat 320

                                                                       
Query: 121 tgctgcagaaattacttttgtttcttacaaccaccatttgaaaagtcaaatttagagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgcagaaattacttttgtttcttacaaccaccatttgaaaagtcaaatttagagagt 380

                                                                       
Query: 181 agaatgcctgtctgctcgcagaaatgtcttccttttactcaagaaaatccaggctcttag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agaatgcctgtctgctcgcagaaatgtctttcttttactcaagaaaatccaggctcttag 440

                                                                       
Query: 241 ttctttccacctgtgcctggatatatgccctctctcactaataaaaatgattgaaaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttccacctgtgcctggatatatgccctctctcactaataaaaatgattgaaaagca 500

                                                                       
Query: 301 ccttgaaaatatgaagtgttatataaatgctaactgaggcaataataaaacagtaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgaaaatatgaagtgttatataaatgctaactgaggcaataataaaacagtaataat 560

                                                                       
Query: 361 aactatttgcagataaacgtcactttcaagcccaggggagacgttttgcaggagggaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactatttgcagataaacgtcactttcaagcccaggggagacgttttgcaggagggaagc 620

                                                                       
Query: 421 agaacaggtcccgtatgtatccctgggccatgcttcactgtgaatcacacccttctcctt 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaacaggtcccgtaggtatccctgggccatgcttcactgtgaatcacacccttctcctt 680

                       
Query: 481 ccatttggatag 492
           ||||||||||||
Sbjct: 681 ccatttggatag 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)