BAC Information

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BAC

Clone NameMSMg01-397B05
Chromosome18 (Build37)
Map Location 41,216,906 - 41,217,339
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B05.T7 (MSMg01no397_b05.b1)MSMg01-397B05.TJ (MSMg01no397_b05.g1)
ACCAG497500AG497501
length840812
length of high quality
(start - end)
278 (44 - 321)434 (75 - 508)
definitionCHROMAT_FILE: MSMg01no397_b05.b1 PHD_FILE: MSMg01no397_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:22 2005CHROMAT_FILE: MSMg01no397_b05.g1 PHD_FILE: MSMg01no397_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACAAAATTTGAAAAAAATGCTACCAATTATTTATTTGATAGAGGAT
TAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACATTAT
GAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAA
AGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAA
ACTGTATATGCCCCAGTACAGGGGAACGCCAGGGCTAAAAAAATGGGAAT
GGGTGGGTAGGGAAGTGGGGTATACCCTTTCCCCTCTCCTTTTTCCCCTC
TTCTTTTTTTTTCCCCCCCTCTTTTTTTTCCCTCTTTCCCCCCTCTTCTT
TTCTTTCTTTCCCCCCCCCCCCCCTCCTTTTTTTCCTCCCCTCTCCCGTC
CTCTGTCCTCATTTTTTTCTTCCCTCCCCTTTCCCTCTCTCCCTTCTTTT
CTACCTTTCCCCTTCCCCAACGTACCCATCCTACCCTATTCTCCTCTATC
TTCTTATCGACCAACTCTCTATCCTCAGTATTCTGCTCATATCTCCCTGT
CTTCACATTCGTTTGTCCTCCATTCTCTCTAATTCTTTTCTCTACCCCCT
ACGTCTCGCGTCCACTAATCATTTACTCCTTTTTTTACCTTTCCGCTTAG
TCTTCCACCCCCGCCCTTTTCACTACCCCCTTTCTCTTTATTATCTCCCC
TCCACCCATCTTTCTTCTTCCTCTCCCCCTTTCCCTTATTCTATCTCCTT
CTTGGTTTATCATTTCCACTCTTATCCGATTCCTTCCTCC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATGGTAAGTGGGTACCTTCTGCTG
CAGTTCTTCCCAATGGCTTGATTCAATGGAGAAAATAAGCCTATAGTTAA
TGTATCTGTAAAAGGGGTTATTTTGTACTCTTTTCCTCATGATATTTCTG
ATCACTACATGAGGAATGGGCCACTAATCTTGGTGTATGTCCCTAGACAT
TTGTTAGAACCCTAAGAGTAACAGATTAAAGCTCGAACACTTTGTGAAAG
AATACAGCCTTATATGAATATGGAGGCACTTGACATAACTGCTGGTCATG
TAGCTTTTTCTAGGAGAGACTATTTCAAAACAGGCTCCCTGGTATTCTCC
TAAAATCCTCCTGTCTCATGACATTCTCTGATCCATGGATACAAGAGCTG
TAATGTAGACATATCCTTTAATGCTGGGTTCTCCACAATTGATTCATCTC
TATATTGTGTCCAGTTGCGGTTTTCTGTGACTATTCCCATTCGCTTTGGA
ACAGAGGCTTTCTTTGTTGAGGAATAATTGTTTTCGCTTTTTCTGATGCT
CAGCATGTCAAATATTTTCTAAAAACGTCTTTTTTCCATACATCGGCTTG
TCTCCTACACTATATGGTCACTTTATCCTCTTCATACCTTCAATTTTTCG
ATATTAACTCCTCACACATAATTTCTCCTATTTTCCTACCCTAGCTTTTG
CTTACTTCTTTTCTACGTCTATGTTTCTCATTTTATATCATCCCCTCCAA
CGCCGCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b05.g1 MSMg01no397_b05.g1 CHROMAT_FILE:
MSMg01no397_b05.g1 PHD_FILE: MSMg01no397_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:23 2005
         (434 letters)



>mm_chr18_41216706_41217539
          Length = 834

 Score =  746 bits (386), Expect = 0.0
 Identities = 422/434 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatggtaagtgggtaccttctgctgcagttcttcccaatggcttgattcaatggagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atatggtaagtgggtaccttctgctgcagttcttcccaatggctttattcaatggagaaa 260

                                                                       
Query: 61  ataagcctatagttaatgtatctgtaaaaggggttattttgtactcttttcctcatgata 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagcctatagttaatctatctgtaaaaggggttattttgtactcttttcctcatgata 320

                                                                       
Query: 121 tttctgatcactacatgaggaatgggccactaatcttggtgtatgtccctagacatttgt 180
           ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 321 tttctgaccactacatgaggaatgggccactaatcctggtgtatgtccccagacatttgt 380

                                                                       
Query: 181 tagaaccctaagagtaacagattaaagctcgaacactttgtgaaagaatacagccttata 240
           |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 381 tagaaccctaagagtaacagattaaagctcaaaaactttgtaaaagaatacagccttata 440

                                                                       
Query: 241 tgaatatggaggcacttgacataactgctggtcatgtagctttttctaggagagactatt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatatggatgcacttgacataactgctggtcatgtagctttttctaggagagactatt 500

                                                                       
Query: 301 tcaaaacaggctccctggtattctcctaaaatcctcctgtctcatgacattctctgatcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tcaaaacaggctccctggtattctcctaaaatcctcctgtctcatgacattccctgatcc 560

                                                                       
Query: 361 atggatacaagagctgtaatgtagacatatcctttaatgctgggttctccacaattgatt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggatacaatagctgtaatgtagacatatcctttaatgctgggttctccacaattgatt 620

                         
Query: 421 catctctatattgt 434
            |||||||||||||
Sbjct: 621 gatctctatattgt 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)