Query= MSMg01no398_e03.b1 MSMg01no398_e03.b1 CHROMAT_FILE:
MSMg01no398_e03.b1 PHD_FILE: MSMg01no398_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:56 2005
(496 letters)
>mm_chr18_87029959_87030854
Length = 896
Score = 772 bits (399), Expect = 0.0
Identities = 461/493 (93%), Gaps = 18/493 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttgcctttctcttcatggttttcttcttttaaatatgaaactatatatttaaa 63
|||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 204 ggaattcttgccttgcttttcatggttttcttctattatatatgaaactatatatttaaa 263
Query: 64 acagtgatgtaactgctctgtaatgtaacagctcactcaagtacctgtgtttgtgtgtgt 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 acagtgatgtaactgctctgtaatgtaacagctcactaaagtacctgtgtttgtgtgtgt 323
Query: 124 ttaattagcattgtagctgcactgattgctgaaaagcctaagtctagtaggatagaatga 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaattagcattgtggctgcactgattgctgaaaagcctaagtctagtaggatagaatga 383
Query: 184 atatacataagtaactttatattgtttctccattaataacatttacatagttaaaacttt 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 atatacataagtaactttatattgtttctccattaataacatttacattgttaaaacttt 443
Query: 244 gatgtaaaaggaatagtactttaggatttatatatgactattgactgagaagaataacaa 303
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 444 gatgtaaaaggaatagtactttaggatttagacatgactattgactgagaagaataacaa 503
Query: 304 ggaaaaaattatatcgtgatgaagaaactgacaaggagagcattgcataagaaatcttcc 363
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaaaaaattagatcctgatgaagaaactgacaaggagagcattgcataagaaatcttcc 563
Query: 364 ctataggacattcatatgagaatcgatggaaagcactttcagaaatacatgtgcatgtgc 423
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 ctataggacattcatatgagaatcgatggaaagcactttcagaaatagatgtgcatgtgt 623
Query: 424 gtgtcaaatgttctgaatattctgttttgaatatatcttcgagagtaccacaatgaactc 483
|||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 624 gtgtcaaatgttctgaatattc------------------gagagtaccataatgaactc 665
Query: 484 atatttttgaata 496
|||||||||||||
Sbjct: 666 atatttttgaata 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_e03.g1 MSMg01no398_e03.g1 CHROMAT_FILE:
MSMg01no398_e03.g1 PHD_FILE: MSMg01no398_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:56 2005
(468 letters)
>mm_chr18_87180808_87181675
Length = 868
Score = 897 bits (464), Expect = 0.0
Identities = 467/468 (99%)
Strand = Plus / Minus
Query: 1 cactgggtgttcaccatatgaaaagacacagaatgatttaattttacttagattattttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cactgggtgttcaccatatgaaaagacacagaatgatttaattttacttagattattttc 609
Query: 61 ccatacagcatttgcaaaagatttgaggacaagtgtgtgtgcatttctttctactctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccatacagcatttgcaaaagatttgaggacaagtgtgtgtgcatttctttctactctatg 549
Query: 121 tgaaatctagtcagtaatgtgtcttagagctcagtggcagggagaggaaccagaacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgaaatctagtcagtaatgtgtcttagagctcagtggcagggagaggaaccagaacagta 489
Query: 181 cttaatggctaagctcttgatctggatgccatctgaggttcactcacgaaaagatgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttaatggctaagctcttgatctggatgccatctgaggttcactcacgaaaagatgtatt 429
Query: 241 ttgcatgattctggctctctcctttatacttaaacggcaccttttcatcaacactcctga 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgcatgactctggctctctcctttatacttaaacggcaccttttcatcaacactcctga 369
Query: 301 gcaagaacagagagacctttggaaaagacacagctcaagaaatagtatgtacaaaagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcaagaacagagagacctttggaaaagacacagctcaagaaatagtatgtacaaaagtgt 309
Query: 361 tagagaactcagaataggtcctggatatcttgtaagttttttcaagttacaaaattattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tagagaactcagaataggtcctggatatcttgtaagttttttcaagttacaaaattattc 249
Query: 421 tgcattttccttattcaaaatgtggtttgatcatggtgcaaaattaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgcattttccttattcaaaatgtggtttgatcatggtgcaaaattaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
