BAC Information

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BAC

Clone NameMSMg01-401M04
Chromosome18 (Build37)
Map Location 61,833,217 - 62,021,606
singlet/doubletdoublet
Overlap geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
Upstream geneNdst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1
Downstream geneSh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M04.T7 (MSMg01no401_m04.b1)MSMg01-401M04.TJ (MSMg01no401_m04.g1)
ACCAG501068AG501069
length743763
length of high quality
(start - end)
168 (84 - 251)191 (130 - 320)
definitionCHROMAT_FILE: MSMg01no401_m04.b1 PHD_FILE: MSMg01no401_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:28 2005CHROMAT_FILE: MSMg01no401_m04.g1 PHD_FILE: MSMg01no401_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,021,439 - 62,021,606)(61,833,217 - 61,833,407)
sequence
NACATCATAAATTGCGGCCGCTAAACGAANCACTATTTCGTATCGAGGGG
CGGNAANCNTANCTTTTCCATACCCCGGGCCANGACCCTGAAGAACAAGG
GCAAAACCAAGGGCCTATCTTACCACCTACATCCCCACCTGTTGTTAGTG
TGTACATTATTAATTTATTGGAATAAGGATGGGTAGTCAGGCCAGTAGAG
CTGCATATAAAACCAGAAGAAAGGCACATAAGGAAGCTGCTCGGTTGCTG
ACCTTTTTAGAACAATTAAGCTGCTTCATAAACAACACAGACATGTGATT
AACTGTCCATGTGGGGGAATTTTTTTCTTTACTGNATATCCCTCACTAAT
GACAATTCCAGATGGTTGCCACGCCACCCATATGAAAAGCCATACAACTA
AACTTCTAGAAAACAACCTCAAGACATCCTTTTCGGATGTCGGACGGAGT
AAAGAATCATTTCTTAAATGTAACACAGAGCATTCAAGTCACAGAGAAAC
CAAAGATAAATCTAACCATAGAAAACTGAGGGTGTGAGTTCATCAGAAAA
CGTATAGGGGAGAAGACTGGAGTTCCAGGTGTTAACAGGAACTGGCGACA
GGCACTCGTTTTCAAGAGAGGAAAATCTCCACTAAAGGTTTCAGTGCGTA
AAAGATTTTTTTTTTTTTTTATGCCCGAAATACAAATGCCTCGTAAATAT
GAAAATATTCTCAAATTCCTATTCCTCCCACCATGACTTTTTT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTACAACAAAATTCGAGGNAGCAGGAGNCTGGTCA
GATCACAGGACCAAATTCTGATTTGCCGAGGATTAGGACTATCATAATAA
TTTAAATGTCTACGAGTCAACCCTGAACATGAGTGAGGAGATGTTGCCAC
ATGCATGACTGTGTGCTTGTGCTTCTAACAGCTGCAATAGTGACCTTCCT
CCAATATTTCTGAGTGAGGCCATTTTCAGTTTAGATTTTAGTTTGAGCAG
GTTGGAAAAGATGCTCTAGATTTTCTGCTTTCTCACCCTGAGGCCACCTA
CCTACCACACTGTCCATCCATCCCATCATTCTCAATTTCAGATCTTGAGC
ACGAGAGTCTACTAGAAATTTCCCTGTTCTCAGAAACCAAGAGGTGGAGG
GGCCTAACGTCCTGTGATTGACAGGTGATAGTCATCACTAATCAGACCTA
CTACCTGTTGACTAATTAATGGTTTCCTCAGAGTTGAAACGTCCCCTCTG
GGAGGTAGGCGGTTAGTAGGTTTGACCATCATGATTCCCACGAAATACAC
AAGGTCATGTGCCCCGCCCTGCCCTCACCCTTTATTCCATGGTCCACGAC
CCAAAAAAAGTCCCTTTTCGTCCCTACCTAGTCTTTCTAAGAATGGGTTA
TTCACTCTACTTGGGCACACCTTCTTCCGCTTAATTTACCCTCTCACAAC
ACTTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m04.b1 MSMg01no401_m04.b1 CHROMAT_FILE:
MSMg01no401_m04.b1 PHD_FILE: MSMg01no401_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:28 2005
         (168 letters)



>mm_chr18_62021239_62021806
          Length = 568

 Score =  255 bits (132), Expect = 8e-73
 Identities = 159/168 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccctgaagaacaagggcaaaaccaagggcctatcttaccacctacatccccacctgtt 60
           |||||||||||||||||||||| |||||| |||||| ||  | |||||||||||||||||
Sbjct: 368 gaccctgaagaacaagggcaaagccaaggccctatcctagtaactacatccccacctgtt 309

                                                                       
Query: 61  gttagtgtgtacattattaatttattggaataaggatgggtagtcaggccagtagagctg 120
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 308 gttagtgtgtacattattaagttattggaataaggatgggtaatcaggccagtagagctg 249

                                                           
Query: 121 catataaaaccagaagaaaggcacataaggaagctgctcggttgctga 168
           ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 248 catataaaaccagaagaaaggcacataaggaagctgctctgttgctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_m04.g1 MSMg01no401_m04.g1 CHROMAT_FILE:
MSMg01no401_m04.g1 PHD_FILE: MSMg01no401_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:28 2005
         (191 letters)



>mm_chr18_61833017_61833607
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggattaggactatcataataatttaaatgtctacgagtcaaccctgaacatgagtgagga 60
           |||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 201 ggattaggactatcataataatttaaatgtctacaagccaaccctggacatgagtgagga 260

                                                                       
Query: 61  gatgttgccacatgcatgactgtgtgcttgtgcttctaacagctgcaatagtgaccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgttgccacatgcatgactgtgtgcttgtgcttctaacagctgcaatagtgaccttcc 320

                                                                       
Query: 121 tccaatatttctgagtgaggccattttcagtttagattttagtttgagcaggttggaaaa 180
           ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagaagtctgagtgaggccattttcagtttagattttagtttgagcaggttggaaaa 380

                      
Query: 181 gatgctctaga 191
           |||||||||||
Sbjct: 381 gatgctctaga 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)