BAC Information

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BAC

Clone NameMSMg01-402B05
Chromosome18 (Build37)
Map Location 31,932,875 - 31,933,180
singlet/doubletsinglet
Overlap geneAmmecr1l
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549
Downstream genePolr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402B05.T7 (MSMg01no402_b05.b1)MSMg01-402B05.TJ (MSMg01no402_b05.g1)
ACCAG501309AG501310
length761777
length of high quality
(start - end)
237 (74 - 310)306 (74 - 379)
definitionCHROMAT_FILE: MSMg01no402_b05.b1 PHD_FILE: MSMg01no402_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:51 2005CHROMAT_FILE: MSMg01no402_b05.g1 PHD_FILE: MSMg01no402_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCTGTCTAACCGCTCAGGCAACAGAACAGAACAATACACACAGCCTGGTA
TCTGTGGTGACATGTGCTGGGATTTAGAGCCAGGCTTTGCCACTTGGCTA
GAGTTTGCCTCAAGGGAGGAAGGGAGAGTGACTTCACTTCTCTTATCTTT
GGCTTCTTCAACTGTCAAATGCAGTGAAATTCCCAGCTGCACAATGCTAT
GGGAAAAGGCAAACTGACCATACCATTGGGCAGTCCGTCCTCTCCAGATG
TTAACCACACATATTTGCAAATGTGTTATATTATGTTTCGGGGGCAGGGT
CTCATTAATTCTACCTGGCTTCTTTATACTCACTATGTAGCCCATGATGA
CCTTGAACCTCTCATCTTCCTGCCTCTGCTTCCCAAGTGCAGAGAATCTG
GGTATGAGTACCACACAGCTTATGTAGCATTGAGGATGGAACCCAGGGCT
TTGCAATTGGGCTACCTCAACACTATAATAACTGAGCTACAACCCCAATT
GTAACTTTCATATTTTTCCATTGATAATTTTAAGTCCTTCGCAAACTAAT
TATTGCTGGCTTGGTTGCTTTGTATGGCTGCCCCAATAAACGATATTCCT
TTGTGAAGGAATTTTCTAATGAATTCTCGCGAACAACTCCCACCACTTTC
CTAGCTTTGGTAGGTTTCCTCCAGCCAGTCACTCTTCGCCTCTGGTTATT
TGGATAGTATT
ATGATAGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTGTAGATCAGGTTGGCTTTGAAC
TCAGAGGCGTGCTTCTGCCTCCCAGTGCTAGGACTAAAGGCATGTGCCAC
CACACCTGGCTTCCAGGGAATTTTTGATGTGGGGTGCTATGATCAGATAC
TCACAACAGAAACGAGGAGATTGAAGCCTGGTAAGATATATATAGGGATG
GTTGTATTCAGAGCCTTGAATTTTTAACCTGGGGGTGGCTGAACTAGACT
AGAGTAGGTTTGGCACAGTAGTTCTGATATGGTGCAAGTATATTATTGAA
AGGAAATGAGAGTAGGTGAGAGATCTGTCAGAGATAAAGATAATAGGTAA
GGACTGGTAATATGGCTCCTTGAGTAAAGTGTTTACAAGTGTGAGGATCT
GACTTCATAATCTCAGAACCCATAGAAACAGACAGTTGCTTGTCTGTATT
CTTAGTACTCCAGTGAGGTGGGATTTGAGAGCGTATACAGTTTGGACCAT
GCTTCAACTATTCTGATATCCTATTCCCTATATAAAGTCTATTATCCCCA
GCTATTTGTTTTTCGCTTAGTCATCTCTATCTGTGACTATTCATGACCCC
ACCATGCTTTCTATCCTCCGTTTTCTCGCCGTTACGTTTCTCCTCTGTTG
CCATTCCTTCCACTGCCGTTAACCTTGTTTTTGTTTGATTTATCCTCCCG
CATGTCTCTTGGATTCTTTTATCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_b05.g1 MSMg01no402_b05.g1 CHROMAT_FILE:
MSMg01no402_b05.g1 PHD_FILE: MSMg01no402_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:51 2005
         (306 letters)



>mm_chr18_31932675_31933380
          Length = 706

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgtagatcaggttggctttgaactcagaggcgtgcttctgcctcccagtgctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgtagatcaggttggctttgaactcagaggcgtgcttctgcctcccagtgctagga 260

                                                                       
Query: 61  ctaaaggcatgtgccaccacacctggcttccagggaatttttgatgtggggtgctatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaaggcatgtgccaccacacctggcttccagggaatttttgatgtggggtgctatgat 320

                                                                       
Query: 121 cagatactcacaacagaaacgaggagattgaagcctggtaagatatatatagggatggtt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatactcacaacagagacgaggagattgaagcctggtaagatatatatagggatggtt 380

                                                                       
Query: 181 gtattcagagccttgaatttttaacctgggggtggctgaactagactagagtaggtttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattcagagccttgaatttttaacctgggggtggctgaactagactagagtaggtttgg 440

                                                                       
Query: 241 cacagtagttctgatatggtgcaagtatattattgaaaggaaatgagagtaggtgagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagtagttctgatatggtgcaagtatattattgaaaggaaatgagagtaggtgagaga 500

                 
Query: 301 tctgtc 306
           ||||||
Sbjct: 501 tctgtc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)