BAC Information

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BAC

Clone NameMSMg01-404K08
Chromosome18 (Build37)
Map Location 67,233,097 - 67,233,340
singlet/doubletsinglet
Overlap genenone
Upstream geneCcbe1, Pmaip1, LOC100042852, Mc4r
Downstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K08.T7 (MSMg01no404_k08.b1)MSMg01-404K08.TJ (MSMg01no404_k08.g1)
ACCAG503264AG503265
length759770
length of high quality
(start - end)
244 (64 - 307)245 (58 - 302)
definitionCHROMAT_FILE: MSMg01no404_k08.b1 PHD_FILE: MSMg01no404_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:23 2005CHROMAT_FILE: MSMg01no404_k08.g1 PHD_FILE: MSMg01no404_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGTCGCTAAACGACCACTAAATCTAGAACATCCGCGGAATTCAAGTCC
CTTTCACTCAACAGCCTCCTGTCCTTCAGGTATCATCAGAAGTAGCTTAG
GTGAGTGACTCCCATCTTAGACCTCCTCGGCTGTCAGAGCCAGTGGCTGC
TACTGGAGAAACCTTAAACTCAGCTGCATTTGATCAGTTCTTGGGACTTG
TCTTTGTAATGTTCTTTGGGGACTGTTTGTCCTGAGCATTTTTCTTTCTT
GTCACCCAGATAGCCTCTGCTTTTGTCCCTTTATCTCTGAGTGAATCCTA
AAGCTTATCTCTTTTCTTCCCCCATCTGTTTCCAAGTTGTAATTTAAATG
AGGCCCTTGGCAGGAATCCTGCCCATGGGATCCTTACCTGGGCCTCCGGG
TTCCGGACTTCTGTGCCTAATACATCCTTGACATCTCCCCTGGACATCTA
GTGATTACCTCATTGTCAAACATGTCAATTCAACCTCACGCTCCCTTCTT
TCAGCTTCTCTCCCTCTCTTCAGCTGCTCATAGCTGTATTTTGGCATGCT
GGAAACGCTAGTTTCTGATTCCTGTCTCCCTTGCTTCACCTTATTTGGGT
CCCTGATATATATATTTACCTTCTTTTTTTTGCTGTATCTTTACTCCTGG
TATTGTATTTTAAGCCTTTCCTGTCAACCAATGATTCCCCTGATATTAAC
CTCCTATCGCGTTCCCAATTTTTATTTCATTAATGTAACCTTTTTTTAAC
GTAATTTTA
GGAGGCCTGGAGGCGCCTGTTTTCAAATTTAGGNGACCTATAGAAGTTTC
CAGAAATCTCACCTGAGGATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGTTTCCTC
AGATTATTTGTTAATAGTACTACCGGAGGATCCAGCAATACCTCTCCTCG
GCATTTATCCAGAAGATGCCCCAACTGGTAATAAGGACTCATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACTCAG
ATGCCCCTCATCAGAGGAATGTATACATAAAATGTGGTACATCTACTCAA
TGGTATATTACTCAGCTATTTAAAACAATGAATTTATGTAATTTTCTAGC
CTTATGGAAGCCACCCGTAGTTCTACCCTTCCCGATTGTATTTATCTCCT
TCTCCACAGTTATTCTTTCAATTATGTATTTAACTGTTTAAGTGGAAATA
TCATTCCCCCTATTTTATCTACTCCCCCCCCATCTCACTGTTATCAATTT
GTTTATATCTCTTTTCACCCTTCTTCCTATCACACGCCATTCTGGCTTTT
TTTGATACATTATTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k08.b1 MSMg01no404_k08.b1 CHROMAT_FILE:
MSMg01no404_k08.b1 PHD_FILE: MSMg01no404_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:23 2005
         (244 letters)



>mm_chr18_67232897_67233540
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctcctgtccttcaggtatcatcagaagtagcttaggtgagtgactcccatcttagacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctcctgtccttcaggtatcatcagaagtagcttaggtgagtgactcccatcttagacc 385

                                                                       
Query: 61  tcctcggctgtcagagccagtggctgctactggagaaaccttaaactcagctgcatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctcggctgtcagagccagtggctgctactggagaaaccttaaactcagctgcatttga 325

                                                                       
Query: 121 tcagttcttgggacttgtctttgtaatgttctttggggactgtttgtcctgagcattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagttcttgggacttgtctttgtaatgttctttggggactgtttgtcctgagcattttt 265

                                                                       
Query: 181 ctttcttgtcacccagatagcctctgcttttgtccctttatctctgagtgaatcctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttcttgtcacccagatagcctctgcttttgtccctttatctctgagtgaatcctaaag 205

               
Query: 241 ctta 244
           ||||
Sbjct: 204 ctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)