BAC Information

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BAC

Clone NameMSMg01-404K11
Chromosome18 (Build37)
Map Location 64,577,798 - 64,578,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2
Downstream geneLOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K11.T7 (MSMg01no404_k11.b1)MSMg01-404K11.TJ (MSMg01no404_k11.g1)
ACCAG503270AG503271
length778781
length of high quality
(start - end)
246 (63 - 308)308 (64 - 371)
definitionCHROMAT_FILE: MSMg01no404_k11.b1 PHD_FILE: MSMg01no404_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:24 2005CHROMAT_FILE: MSMg01no404_k11.g1 PHD_FILE: MSMg01no404_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGGCCGCAAAACGACTCCTACTTTCAAATATGCGCNGGAATCCCTATAA
TTACTCACTCTGGAAGCTTGAATAGGCAGGGAAATTAGCTCACTCTAGCT
CTAGGGCTGTAAAAATGAACGTGGCCACAGAGGAGGGAGAGAGCAAGGGC
ACCCACTCTCTCGGGAGAGTGTAGGGGTTTCTGTCATTGTGACAAAGATT
TTTTTTCCTCCTTTTTAATTTGGAAGTAGAATTTTCCCCCATCTTGGGTA
GTGAAGCCTGAGAAAAGTGAATTTAGTGTTCTGTGATGGAAGTAATTTCC
AAGCTCTTTCATGATTTAGCAAAAAAATCAATCGGGAAGTTAGTTGTCAT
GAACTGGGGCTTAGAACTGGGGCTGACTCCCCTTGACCTTAGAAAGAATT
ACCCTGATCGAAATCCCAGCTTTCCTTGCGTTCGCTCCTCTCAAATCTAG
GTCCTTAGAGATGTCATTCAGCATAATAATTTTTAGATGATACCTACAGT
GTTCTTCATGTTTGTTTGTTTTGGTTGACTTAAGCCGCCACCTTCGGGTT
TTCTTCTGCGTCCTTTAATTTTCATTAGGAGGGAATTTTGTGTTGGGGAA
CTCTCTCTGAAAAATTCCTTTTTTTCACCTTTTTATTTTCCGGGTTTTTT
AGTACGTTTTATTTTATTTCTCCTTGCCGCATTTCCCGAGAGTGTGTTTT
ACCTTTTTTTCTTTTTTCCCCGCGTTTATTCCGTATTATTTCTTTTGTCC
AATCTCCCCTTTTTTTACTCCTTCTTTC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCATCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTTCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAGCCATT
GCTGTTCTGTTCTGGAATTTTTCCCCTGTGCCCGTACCCCGGAGCTCTTG
ACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAA
AGAGAGGCTCATTGTACACGCCCTATTTATATGCCCCAGTACAGGTGAAT
GTCAGGTCCTATTTGGGGCTAGTGTTTGTTTACTTATACTTCTTCCCCTT
TTTTTTATTTTCCCCAAATTTTTTTATTATTTTCCCCTCTTCCTTTCTTA
TTTTTTATTTGATTAAAATTCCCACTCTTATTCTTTCTCCTTACCTTATT
TTTTCACCCCTCCCTTTTTTCTTTATTTTTATTATCCCCCCCCCTATATT
TTTATCTCCCCTTTGTTATTTTTTATATCTTTGTATGTATCCTATCTTTT
TTTTTCCATTTTCCCCCCCCTCTTCTTTACTACTACTATCTCGACTCTTC
TTCCCCCCTTCCTTTTATCTATTTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k11.b1 MSMg01no404_k11.b1 CHROMAT_FILE:
MSMg01no404_k11.b1 PHD_FILE: MSMg01no404_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:24 2005
         (246 letters)



>mm_chr18_64577598_64578243
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 240/246 (97%), Gaps = 4/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcttgaataggcagggaaattagctcactctagctctagggctgtaaaaatgaacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagcttgaataggcagggaaattagctcactctagctctagggctgtaaaaatgaacgt 385

                                                                       
Query: 61  ggccacagaggagggagagagcaagggcacccactctctcgggagagtgtaggggtttct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggccacagaggagggagagagcaagggcacccactctcttgggagagtgtaggggtttct 325

                                                                       
Query: 121 gtcattgtgacaaagattttttttcctcctttttaatttggaagtagaatttt--ccccc 178
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 324 gtcatcgtgacaaagattttttttcctcctttttaatttggaagtagaattttttccccc 265

                                                                       
Query: 179 atcttgggtagtgaagcctgagaaaagtgaatttagtgttctgtgatggaagtaatttcc 238
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 --cttgggtagtgaagcctgagaaaagtgaatttagtgttctgtgatggaagtaatttcc 207

                 
Query: 239 aagctc 244
           ||||||
Sbjct: 206 aagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)