BAC Information

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BAC

Clone NameMSMg01-404L12
Chromosome18 (Build37)
Map Location 36,515,433 - 36,515,831
singlet/doubletsinglet
Overlap gene0610010O12Rik
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L12.T7 (MSMg01no404_l12.b1)MSMg01-404L12.TJ (MSMg01no404_l12.g1)
ACCAG503320AG503321
length783766
length of high quality
(start - end)		276 (35 - 310)398 (65 - 462)
definitionCHROMAT_FILE: MSMg01no404_l12.b1 PHD_FILE: MSMg01no404_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:29 2005CHROMAT_FILE: MSMg01no404_l12.g1 PHD_FILE: MSMg01no404_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTCC
TTACCAGGTTGTGGTGGTACGTGCCTGTAATCCCAACACCTAGGTAGAGG
AAGGAGGATCAGAAATTTGAAGTACACTGGGCAGTGGTGGCGCACGCCTT
TTAATCCTAGCACTTGGGAGGCAGAGGTAAGTGGATTTCTGAGTTCGAGG
GCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA
AATCCTGTCTCGAAAAACCAAAAAACAAACAAAAAAAACAAAAAGAATTC
TTGAGTTCAAGGTTATGCCTGTGCTGTTTAAGATCCTGTCTTAAAAGGAG
TGTGGGAGTAGGTAGGAAATTCTTCCTGATTTTACATGAGGCTAAAATGA
GGCTCACCTACCTTTAACATACATGTACGGCCTTTAGTTATATTCCAAAC
GCTTAGTCTCGGCCTTTGTAATATGTATCATTGCCCTCCTATTATTGTCC
TGCTCTATCTCACGTTCCATGATTTATTTCTTCATTTCTCCTGTCCTCTC
TGTTGTTTTGATTCCCCCCCCCTTTTTATTTTCTAAATTCCCCCCCTCCC
TTCTTCTTTTTTTTCAACTTCTCTTTTTCTTTTTTTTATCCCCTCTCCTC
TCTTATTCTTTTTTCTTTTTTCCCCCCCCTTTTTTTCCTACCCTCCTATT
TTTTCTATCATTTCCCCCCCCCTCCCTTATATTTTCCGCTTCCCTTTTTC
CATTCCCCCTCCCCTCCCCTTTTATTTTTCTTT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAGATGACAATTTTCTGTCACTGTGAACACTTACAA
AGAACACTCAACATGCAAAAAAGACAGAGGGTTCAAAGCAGTTAGTAGCA
CCAGCGAAACTAGAAACTAATTGCATAAATAAAACCTGCATTTTCCAGGG
GCACACTTGCATAGAAAGGACAGTACTGCAGCACATCATCAATAAAGTCA
GGCTCTACCAGTCTACCAGAGCATTAGATTGGCTTTTCTTTTTCTGGAGA
CACAGTCTTGCTATGTATTCTAGTCTGGCCTTGAGCTTGTAATCCTTTTA
ACTTGGTTTCCTGAGGTAGGTTTGCTGTGTGCTACTTAGTCTCAGTAACT
AGATTCTTCATTTTGTGGCTTTCTTAGTATGCACAAATTTTAGGACAAGG
TTTAAGGAGACTTCTCTGAAGGTCTGCCTACCCAAACCAGCCCTACCACC
CACTGACTGCCACCTGGAAGACTCACCCCAGATGAGCTCTCTCATTGGGT
GAAAATGTACGCCCCACGAATTAAAGAATCTGTACATCTTAAGTTTTCCT
CTTTCCCCTCTTATTTGCGGAATGGGACCAACCCGTCCCCCACTTCAAGT
GTGTGGTTTCTTTTGTCCCCCCTTAAAAAAAAATCAGAAAATATATCACT
CACCCCCTCCCTGAGGAATTCTTTCCCCCCACTTTATTATATTCATTCAT
TCTGCCCCTTTTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l12.g1 MSMg01no404_l12.g1 CHROMAT_FILE:
MSMg01no404_l12.g1 PHD_FILE: MSMg01no404_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:29 2005
         (398 letters)



>mm_chr18_36515412_36516210
          Length = 799

 Score =  717 bits (371), Expect = 0.0
 Identities = 392/399 (98%), Gaps = 1/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatgacaattttctgtcactgtgaacacttacaaagaacactcaacatgc-aaaaaag 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 420 tagatgacaattttctgtcactgtgaacacttacaaagaacactcaacatgcaaaaaaag 361

                                                                       
Query: 60  acagagggttcaaagcagttagtagcaccagcgaaactagaaactaattgcataaataaa 119
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acagagggtttaaagcagttaatagcaccagcgaaactagaaactaattgcataaataaa 301

                                                                       
Query: 120 acctgcattttccaggggcacacttgcatagaaaggacagtactgcagcacatcatcaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acctgcattttccaggggcacacttgcatagaaaggacagtactgcagcacatcatcaat 241

                                                                       
Query: 180 aaagtcaggctctaccagtctaccagagcattagattggcttttctttttctggagacac 239
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 240 aaagtaaggctctaccagtctaccagagcattagattggcttttctttttttggagacac 181

                                                                       
Query: 240 agtcttgctatgtattctagtctggccttgagcttgtaatccttttaacttggtttcctg 299
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agtcttgctatgtagcctagtctggccttgagcttgtaatccttttaacttggtttcctg 121

                                                                       
Query: 300 aggtaggtttgctgtgtgctacttagtctcagtaactagattcttcattttgtggctttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aggtaggtttgctgtgtgctacttagtctcagtaactagattcttcattttgtggctttc 61

                                                  
Query: 360 ttagtatgcacaaattttaggacaaggtttaaggagact 398
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ttagtatgcacaaattttaggacaaggtttaaggagact 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 799
Length adjustment: 9
Effective length of query: 389
Effective length of database: 790
Effective search space:   307310
Effective search space used:   307310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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