Query= MSMg01no405_b07.b1 MSMg01no405_b07.b1 CHROMAT_FILE:
MSMg01no405_b07.b1 PHD_FILE: MSMg01no405_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:58 2005
(511 letters)
>mm_chr18_67733347_67734257
Length = 911
Score = 942 bits (487), Expect = 0.0
Identities = 501/509 (98%), Gaps = 6/509 (1%)
Strand = Plus / Minus
Query: 5 gaattctttattttttttccctttttgagatagtgtctcactatccagccctggtaggcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gaattctttattttttttccctttttgagatagtgtctcactatccagccctggtaggcc 776
Query: 65 taaaacttgatatgcagaccagactggccttgactttagagagatctgcctccctctgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 taaaacttgatatgcagaccagactggccttgactttagagagatctgcctccctctgcc 716
Query: 125 tcctgaatgctgagattaaaggtgtgtatcaggctttgtttatattaatttttatagtga 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tcctaaatgctgagattaaaggtgtgtatcaggctttgtttatattaatttttatagtga 656
Query: 185 aaaatgaaatgactagaaaataagccatacacaccccatcatctccagttccactcttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aaaatgaaatgactagaaaataagccatacacaccccatcatctccagttccactcttta 596
Query: 245 gtaataaaaccttttagcattgtatattttcttacttttttccttgtgggcatgggttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtaataaaaccttttagcattgtatattttcttacttttttccttgtgggcatgggttat 536
Query: 305 tataagaattatgttacatgtgagcagtactggtttgtaaccaaatttttcacctaattt 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tataagaattatgttatatgtgagcagtactggtttgtaaccaaatttttcacctaattt 476
Query: 365 agagcctcctgatctttgctttaatggtagagattgaacatccaagctgttggacaggtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agagcctcctgatctttgctttaatggtagagattgaacatccaagctgttggacaggtg 416
Query: 425 gatcaaatacatttttcttatgatgagtttattggagttcagtactctgtgtcaattat- 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatcaaatacatttttcttatgatgagtttattggagttcagtactctgtgtcaattatt 356
Query: 484 -----tctgtgtgtgtgtgtgtgtgtgtg 507
||||||||||||||||||||||||
Sbjct: 355 ttctctctgtgtgtgtgtgtgtgtgtgtg 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_b07.g1 MSMg01no405_b07.g1 CHROMAT_FILE:
MSMg01no405_b07.g1 PHD_FILE: MSMg01no405_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:58 2005
(417 letters)
>mm_chr18_67578033_67578849
Length = 817
Score = 717 bits (371), Expect = 0.0
Identities = 403/419 (96%), Gaps = 12/419 (2%)
Strand = Plus / Plus
Query: 1 aacctaggtcctgcagatggaagtcaacaacgcggagggaaagtcaggcagatacatgag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aacctaggtcctgcagatggaagtcaacaactcggagggaaagtcaggcagatacatgag 260
Query: 61 aaaatcagcaacatagtagaaaaattcaacaaggaaactaagattttgaaataattaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcagcaacatagtagaaaaattcaacaaggaaactaagattttgaaataattaaat 320
Query: 121 atattttagaaagaaaaa--tttattgaatcaaataaaaattaaaatggaaggtctttca 178
||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattctagaaagaaaaaaattaattgaatcaaataaaaattaaaatggaaggtctttca 380
Query: 179 aggcaaatatattggaagtaacatcagaaataaaccaaaaaaaaaaaaaaacacagaaaa 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aggcaaatatattggaagtaacatcagaaataaaccaaaaaaaaaa-----cacagaaaa 435
Query: 239 aaaaaaaagaatagcaaaccaagattgttacatcaaacaatggtgtatttttaaattgat 298
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 436 aaaaaaa-gaatagcaaaccaagattgttacatcaaacaatggtgtattttaaaattgat 494
Query: 299 aacaaaaaaaaaaaaagacatttcaagatgagcataaagtaacacagtttctgatgacca 358
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aacaaaaaaaaa----gacatttcaagatgagcataaagtaacacagtttctgatgacca 550
Query: 359 agccagcactacagaagataggtaaagaaatactattcacagaggaggagaaaagtctc 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agccagcactacagaagataggtaaagaaatactattcacagaggaggagaaaagtctc 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
