CTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATAAGTACATGCAATTCTACACAGAACATTGCATCTGA
GAGTAAGAGTTTAGCTTCTCCATGAATCAATAAATGGTCAACAATGACTC
CTTGCCATGAGTATTTACAAATAAGGATGTGTGGACAAAGGGGTATACTG
TGTGACACTCTACAGCTTCCATAATGAGGTGGTGTGGTTTTTTGTTTTGT
TTTGTTTTATTGTTTTTGTTTNATGTTTCTTTTCTTATATATCTGCCTTT
CTTTATTATNCCCTCCCCTCTTTTTTCCCTCACACTCTTCTACCCATCAT
TTATGTTCCCTGTTTTTTTTCCCCTCCCCTCAGTTTTTGTCCATTTGTCC
TTTTTATGTCCCCTGTCCCACTTGCTAATCTCTACCATTATCTCGTTTAT
TTAATTCATCGTTTCCGCACTCACCTTTATCTTTATTCTTTTTCTTCTCC
TTTTTTTTCTTTTATTCACTTTTTTACTCTTTTCCCCTCACCCTTTTCTC
TTCCTTTTTTTTCCTGTCCATCCTTTCCCTATTTATCTCTCACTTATCTT
TCCCCTCTTTTTTATTACTTTACTTTCCCTCTCTTTATCCCATTTACACT
ACCTACTATATTTCAACCTATTCCTCCTTTCTATTCTTATATTCTTTCTC
TACTTTTCTTCTCCCTTTTTTTTTTATTAATTCACTTCTAACCTTTTTTC
CTTTACTTATTGCGACTTCTTTATATTCTCCTCACTCTTATTACCCCTN

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGCTGTTAAAGGATATGTAG
GCTCACAAACAAAAATAAAATATACAGCCTATCAGATCAGTTTCAGTAGG
CTGTCCTTTATCATTCATCTCATTTACATATATGTTATTGAAGAAGGAAT
TATAAAAACACATTTAAAAACAACCCCCTCCCATCCCACTACCCACCCCT
TCCCAAACAAAAATGCTAAACAATAAGATACCCAACCAGAGAGGACAGAG
CCCATTTAGTCTTTGGTTGCTGGAAAGTTGTCTTTTTCTTACCTGAGTTG
TCAACATATTCTATAACATTGGCATTACCAGGTGGCATTTGTGGCACACA
GATGGTGGTTATCCCCTGAAAGACAAAAGACAACATTTTCCCATTTGTAA
TGAGCTTTTTCTTCCTCTACTTGTATATTTTTATTCTAAAATTACCACAG
AGTTCCTAAAAGAAGACTATTTAGGATCATTTTAAATTCAACTTAAAAGC
TGAATCTCATTTTTGTCTTGTCTGGTGACCTCTACTGAGTTTTGAGGTAC
AAACTCTTCCTTTCCTTCCTAGCTTACCAAGAAATACAGATAGTGTAAAT
TTTTATCATTGTATGGTACCTCTTGGAGACGAAATTTTGGGGGAGTTCCC
CAAATTTTATTTCTTGTGATTATGTACTTAATTCCGGGTGGTTCTCGGGA
TTTGGGGCCCCTCCCN

Query= MSMg01no405_c04.g1 MSMg01no405_c04.g1 CHROMAT_FILE:
MSMg01no405_c04.g1 PHD_FILE: MSMg01no405_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:02 2005
         (503 letters)



>mm_chr18_20563357_20564260
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/504 (98%), Gaps = 1/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagctgttaaaggatatgtaggctcacaaacaaaaataaaatatacagcctatcaga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 actcagctgttaaaggatacgtaggctcacaaacaaaaataaaatatacagcctatcaga 645

                                                                       
Query: 61  tcagtttcagtaggctgtcctttatcattcatctcatttacatatatgttattgaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcagtttcagtaggctgtcctttatcattcatctcatttacatatatgttattgaagaag 585

                                                                       
Query: 121 gaattataaaaacacatttaaaaacaaccccctcccatcccactacccaccccttcccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaattataaaaacacatttaaaaacaaccccctcccatcccactacccaccccttcccaa 525

                                                                       
Query: 181 acaaaaatgctaaacaataagatacccaaccagagaggacagagccca-tttagtctttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 524 acaaaaatgctaaacaataagatacccaaccagagaggacagagcccattttagtctttg 465

                                                                       
Query: 240 gttgctggaaagttgtctttttcttacctgagttgtcaacatattctataacattggcat 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 464 gttgctggaaagttgtctttttcttacctgagttgtcaatatattctataacattggcat 405

                                                                       
Query: 300 taccaggtggcatttgtggcacacagatggtggttatcccctgaaagacaaaagacaaca 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 404 taccaggtggcatttgtggcacacagatggtggttatcccctaaaagacaaaagacaaca 345

                                                                       
Query: 360 ttttcccatttgtaatgagctttttcttcctctacttgtatatttttattctaaaattac 419
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttttcccatttgtaatgagccttttcttcctctacttgtatatttttattctaaaattac 285

                                                                       
Query: 420 cacagagttcctaaaagaagactatttaggatcattttaaattcaacttaaaagctgaat 479
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cacagagttcataaaagaagactatttaggatcattttaaattcaacttaaaagctgaat 225

                                   
Query: 480 ctcatttttgtcttgtctggtgac 503
           ||||||||||||||| ||||||||
Sbjct: 224 ctcatttttgtcttggctggtgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)