BAC Information

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BAC

Clone NameMSMg01-405I20
Chromosome18 (Build37)
Map Location 20,832,449 - 20,832,905
singlet/doubletsinglet
Overlap geneTtr
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2
Downstream geneLOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405I20.T7 (MSMg01no405_i20.b1)MSMg01-405I20.TJ (MSMg01no405_i20.g1)
ACCAG503956AG503957
length797791
length of high quality
(start - end)		463 (48 - 510)414 (78 - 491)
definitionCHROMAT_FILE: MSMg01no405_i20.b1 PHD_FILE: MSMg01no405_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:34 2005CHROMAT_FILE: MSMg01no405_i20.g1 PHD_FILE: MSMg01no405_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTAGAAGGTTCGCGATCAAACTTTTTAAAGAAAGAAAATACTTT
TTGACTCATGATTTAAAGGCATCCTTTCCATCTTGGGGAGGTCATGGGTG
CTCCTGGCAACTTGCTTGAGGAAGATAGGTCAGAAAGCAGAGTGGACCAA
CCGTTCAATGTTTTACAAGCAAAGCATACACTAAGCATGGTCTGTAGCTA
TTAAAAGCACACAATCTGAAGGGCTGTAGATGCACAGTAGTGTTTTTCCA
GAGCATGTTCAAAAGCCCTGGGTTCTATCACAATACTGAAAAGTAGGCCA
AAAAACATTCTGAAAATGAAATATTTGGGTTTTTTTTTTTATAACCTTTA
GTGACTAAATAAAGACAAATCTAAGAGACTAACTGTGGCTGCTTATATCA
TGTTAATTTGGGTCCCCAAAATTGTTTGTATGAACATCCACACTGGTAAA
TAAAGTTGTGGCACCCCATGGCTGGGCAGGGTACATGGAGGCAGGACTTT
TATATTCCTGTGGGAGGGAGAAAGAAGGAGGAATCCCCCTGTCTTATACA
CGTAATGACTAATCTCCTTGCCTGCTCAAGTGCCCCTAAAGAAAATATAA
TTTTCTCTGGCCGTAATCTTTGTTTATTTTTTTCCTTCACTGTTTCGCCC
CTCCTTCGTTTCTTCATTTGTTCTCTCTCACAAATGATCTATGCACTGCA
TCTGCACTACTCTTTTTCTTTTCTTCTCCCATGTTTGTTTTCCCCCT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGAAGATTGCTCAGTGGTA
AGAACAAGCAATGTTCTTACAAAAGACCTGAAAACAGTTTCTTGCACCCA
CAATGGGCCACTTAACAGCTTCCTCTAACCCCAGTTCAAGAACAGTCATT
GTTTTCTTCTGGACTCCAGAGGCATCTACACTTACATGTACACACACACA
CACACACACACACACACACACACACACACACAAGCACACAGGAGGGGAGT
TATAACTTAATAGTAATTAACTCTGAGTCACCAATAATGCATCAATGTCC
CATTAAGGAAAGGAATCAAACCACTTCCCTTTGAGACATTTAACCAACAA
GTCCAGTTTTGAATTCTCTACTTCATTCTCCTGTGTCTCGTATTCTCTGT
CTATTGTATGAGTCTGAACCTGTGTCTTTCTGTCCCTGTGTGTGTCTTGT
TGTGTGACTGTGTGGGTCCATTGTGCGAGTCTGCTCTTTCTCTATTGTGT
CTCCGAGCGACTGCGTATGTCAGTCTTGGTCTGGCCTCTTAAAAGGCATT
TGTTCTGGCATATAATTTATCCAATATTACCCAACATGTTTATGCGCGCT
TTATTTTCCATATTTCCCTTATCTCTTTCCCTCCACACCCCTTATTTTCC
CTCCTTCTTTTTGAACTCCTTAACTTCTGTATTTCCCTCTTTTACACCCA
TCCTTATTTTTTCTTTCCTCTCTTTCTTATCCCTTAGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_i20.b1 MSMg01no405_i20.b1 CHROMAT_FILE:
MSMg01no405_i20.b1 PHD_FILE: MSMg01no405_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:34 2005
         (463 letters)



>mm_chr18_20832245_20833105
          Length = 861

 Score =  832 bits (430), Expect = 0.0
 Identities = 452/460 (98%), Gaps = 4/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagaaggt-tcgcgatcaaactttttaaagaaagaaaatactttttgactcatg 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagaaggtat-gcgatcaaactttttaaagaaagaaaatactttttgactcatg 263

                                                                       
Query: 64  atttaaaggcatcctttccatcttggggaggtcatgggtgctcctggcaacttgcttgag 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttaaaggcatcctttccatcttggggaggtcatgggtgctcctggcaacttgcttgag 323

                                                                       
Query: 124 gaagataggtcagaaagcagagtggaccaaccgttcaatgttttacaagcaaagcataca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 gaagataggtcagaaagcagagtggaccaaccgttcaatgttttacaagcaaaacataca 383

                                                                       
Query: 184 ctaagcatggtctgtagctattaaaagcacacaatctgaagggctgtagatgcacagtag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaagcatggtctgtagctattaaaagcacacaatctgaagggctgtagatgcacagtag 443

                                                                       
Query: 244 tgtttttccagagcatgttcaaaagccctgggttctatcacaatactgaaaagtaggcca 303
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 tgttttcccagagcatgttcaaaagccctgggttcaatcacaatactgaaaagtaggcca 503

                                                                       
Query: 304 aaaaacattctgaaaatgaaatatttgggtttttttttttataacctttagtgactaaat 363
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 504 aaaaacattctgaaaatgaaatatttgggttttttttt--ataacctttagtgactaaat 561

                                                                       
Query: 364 aaagacaaatctaagagactaactgtggctgcttatatcatgttaatttgggtccccaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagacaaatctaagagactaactgtggctgcttatatcatgttaatttgggtccccaaa 621

                                                   
Query: 424 attgtttgtatgaacatccacactggtaaataaagttgtg 463
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attgtttgtatgaacatccacactggtaaataaagttgtg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space:   385503
Effective search space used:   385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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