Query= MSMg01no406_f04.b1 MSMg01no406_f04.b1 CHROMAT_FILE:
MSMg01no406_f04.b1 PHD_FILE: MSMg01no406_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
(347 letters)
>mm_chr18_54666515_54667262
Length = 748
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 68 acacacacacacacagaggcacactcaccttaaccaagaaattattcaaattgatgcctc 127
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 571 acacacacacacacagaggtacgctcaccttaaccaagaaattattcaaattgatgcctc 512
Query: 128 tcaggaaaggagcgatataccaatggagagtcacataatatatcagcagcactcctggca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcaggaaaggagcgatataccaatggagagtcacataatatatcagcagcactcctggca 452
Query: 188 gacatcatgctctggagtagatgaccagggcaaaatgaactcactcaagagtagttggcc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gacatcatgctctggagtagatgaccagggcaaaatgaactcactcaagagtagttggcc 392
Query: 248 agcacatggtt-gggggggggtgctctttcttttgtttgagtattgtttttgttttattg 306
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agcacatggttggggggggggtgctctttcttttgtttgagtattgtttttgttttattg 332
Query: 307 attttaaattttgttttgattttgattttctgtcactgtgt 347
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actttaaattttgttttgattttgattttctgtcactgtgt 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space: 249782
Effective search space used: 249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_f04.g1 MSMg01no406_f04.g1 CHROMAT_FILE:
MSMg01no406_f04.g1 PHD_FILE: MSMg01no406_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
(444 letters)
>mm_chr18_54470530_54471372
Length = 843
Score = 781 bits (404), Expect = 0.0
Identities = 434/446 (97%), Gaps = 5/446 (1%)
Strand = Plus / Plus
Query: 1 tctagaaaaagagaagttccagaaactgtagactacatgaagaaggataaggaaaactta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tctagaaaaagagaagttccagaaactgtagactacatgaagaaggataaggaaaaatta 260
Query: 61 actgacattttcaactctgactttccagttattgacagttacctagctaatgaagaaatc 120
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 261 actgacattttcaactctgacttcccagttattgacagttatctagctaatgaagaaatc 320
Query: 121 agccactcccatactagcagaaaaccagtattctgagctcggtaggacacatgaattgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccactcccatactagcagaaaaccagtattctgagctcggtaggacacatgaattgca 380
Query: 181 tattagaatccaaaatccagcccaggatcttactgatttctctgttccaaagaagtaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattagaatccaaaatccagcccaggatcttactgatttctctgttccaaagaagtaatt 440
Query: 241 gactttg--ttttgttttccaattcttgggactcaggaaacaacaacctactgctagttg 298
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gactttgggt---gttttccaattcttgggactcaggaaacaacaatatactgctagttg 497
Query: 299 aagaaagtctataagaattaaggaccaaagtttggttgccagtattaaaatgataggatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 498 aagaaagtctataagaattaaggaccaaagtttggttgccagtattaaaattataggatt 557
Query: 359 tttaccatgtaaaaagggggtgaatgcattgaaaatcaatttcataaagtcataaaactt 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttatcatgtaaaaagggggtgaatgcattgaaaatcaatttcataaagtcataaaactt 617
Query: 419 attaaatcttcaagactatatggaaa 444
||||||||||||||||||||||||||
Sbjct: 618 attaaatcttcaagactatatggaaa 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space: 361522
Effective search space used: 361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
