Query= MSMg01no406_i05.b1 MSMg01no406_i05.b1 CHROMAT_FILE:
MSMg01no406_i05.b1 PHD_FILE: MSMg01no406_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:51 2005
(171 letters)
>mm_chr18_85421744_85422317
Length = 574
Score = 281 bits (145), Expect = 2e-80
Identities = 167/177 (94%), Gaps = 9/177 (5%)
Strand = Plus / Plus
Query: 1 ttct-aaactatttgtttttaga-gatatacaaccctttctcctat-aaataaaccaatt 57
|||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttctaaaactatttgtttttagattatatacaaccctttctcctataaaataaaccaatt 260
Query: 58 tatcatttgcttgttttctataaattcttttttttt---ctattcatgacttttattctt 114
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 261 tatcatttgcttgttttctataaattc---tttttttttctattcatgacttttattctt 317
Query: 115 gagatgactttaaccctctatctttgatgtccccaagttcatcctggctaattaatc 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gagatgactttaaccctctatctttgatgtccccaagttcatcctggctaattaatc 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 574
Length adjustment: 8
Effective length of query: 163
Effective length of database: 566
Effective search space: 92258
Effective search space used: 92258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_i05.g1 MSMg01no406_i05.g1 CHROMAT_FILE:
MSMg01no406_i05.g1 PHD_FILE: MSMg01no406_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:51 2005
(237 letters)
>mm_chr18_85599330_85599966
Length = 637
Score = 404 bits (209), Expect = e-117
Identities = 230/237 (97%)
Strand = Plus / Minus
Query: 1 ttggatattgcatatatactgagcttcatctggattggaagatttaaggctgctatcagc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 437 ttggatattgcatatatactgagcttcatctggattggaagacagaaggctgctatcagc 378
Query: 61 tagtgtgtgaacagacccagcccagagggtatggaaatcttcctgcatgagctggctttt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagtgtgtgaacagatccagcccagagggtatggaaatcttcctgcatgagctggctttt 318
Query: 121 agtctatggaaggggactgaggggactaagtcactgtcattcacagatgactctgattag 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 agtctagggaaggggactgaggggactaagtcactgtcattcacagatgactctgaaaag 258
Query: 181 ctagctgtgctacagagtgccttgtaaacatcattgacaagctgctgagccacaggt 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctagctgtgctacagagtgccttgtaaacatcattgacaagctgctgagccacaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
