XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAACCCTCAATTCTTTCCCAGAGAAGCTTTATGCATCTCTAGCTTAAAA
GTTCAGGAGTTGCCAGTTGCTATGACTTTAACTGTTTTGTTTTTAACTGT
CTTTTGGGTTACCTTTATACATCTGGCAAGACTAATTTTCTAAATTTCAT
TTAGAAACTTGTAATTCTTTTTCTGCTCTTAACATTTCCCACAATTTCTC
ATTATCTCAAGTACTAATTAAAATTAAAGTGGCAAGGAAAAGCTGTCCAC
AATGCCCACCATTGTTGCACCTAGTTTTCTGGTATGATACTTTAAATATA
CTGGAAACAAGAGAAAATTATAAAGCTTTGTTTATAAACTATCCACATTT
ACAAACATTGTTCAGTACTCTTTTTCTGTTTTTTATTTTTTTGCTTTCTT
TTTTGCTTTCTTTTTTTAATTATTTAATTTTGTTGTTGTTTTAAAAACAG
GGAAACACTTAAACTTGTAAACCTATTTGAACCTCTTGATAAAATCATGC
AGCAGAGTTTTAGGGAGAGTTTACAAATGTGAAGATACCTAGTTCCTTTT
TATTTCAATAATCATGTTACCTGATTTTCTATGAATAAGTCACCCTTCAT
TCATGGGCATTATATGATTTCAGCTTGCAAAATCATACTCAGTGGGATGT
GGTTTTAACTTAATAAAAAAGAGAGGTCCATTGGTCAGGCAAACTTTATA
TGCCCCAGTAC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAACTGAGGTATCTCCAGTGGCAGGAAA
GCACTCAAAGAAATGCTCAAAGACCTTAGCCACCAGGGAAATGCAAATCA
AAACAACTCTGAGACTCCATCTTACACATCTTCTACCCAGCACAATGATG
AAGATCAAAAACCCAAGCTACAGCATATGTTGGTGAAGATGTGGACTAAG
GGGAACATTCCTCTATTGCTGGTGGGAGTGCATACTTAAAATTACAACCA
CTCTGGAAATTAATCTGACAGTTTCTCAGAAGACTGGGAATAGTTCTACC
TGAAGACCCAGCTACACCACTTCTGGGGATATACCCAAAAGATGCTGCTC
CATACCACAAGGACATGTGTTCCACTATATTCATACATCTTTGTTTGTAA
TAGCCATAAATTCCCAGATGCCCCTCAACCAAAAAATGGATACAGAAAAT
GTGGTTCATTTACACAATGGACTACTACTCAGCTCTTAAAAACAAGGACA
TTATGAATATTGTAGGTAAATATATGAAACCAGAAAATACCATCCTGAGT
GAGATAACCCAGACCCAAAGGACATGAATGGTATGCACTTACTTATAAGT
GGATATTAACCCAAAACTACAGGATACCCATGTTATAATCCACAGAACCA
AAGAAGCTAAACCAGAACGAAGGCCCTGGAGAGTATTTTTGAATTTCACT
TAAAAGGGT

Query= MSMg01no407_p01.b1 MSMg01no407_p01.b1 CHROMAT_FILE:
MSMg01no407_p01.b1 PHD_FILE: MSMg01no407_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:44 2005
         (653 letters)



>mm_chr18_89911745_89912797
          Length = 1053

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%), Gaps = 1/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaccctcaattctttcccagagaagctttatgcatctctagcttaaaagttc 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaattcagagccctcaattctttcccagagaagctttatgcatctctagcttaaaagttc 519

                                                                       
Query: 65  aggagttgccagttgctatgactttaactgttttgtttttaactgtcttttgggttacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aggagttgccagttgctatgactttaactgttttgtttttaactgtcttttgggttacct 459

                                                                       
Query: 125 ttatacatctggcaagactaattttctaaatttcatttagaaacttgtaattctttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttatacatctggcaagactaattttctaaatttcatttagaaacttgtaattctttttct 399

                                                                       
Query: 185 gctcttaacatttcccacaatttctcattatctcaagtactaattaaaattaaagtggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gctcttaacatttcccacaatttctcattatctcaagtactaattaaaattaaagtggca 339

                                                                       
Query: 245 aggaaaagctgtccacaatgcccaccattgttgcacctagttttctggtatgatacttta 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 338 aggaaaagctgtccacaatgcccaccattgttgcacttagttttctggtatgatacttta 279

                                                                       
Query: 305 aatatactggaaacaagagaaaattataaagctttgtttataaactatccacatttacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aatatactggaaacaagagaaaattataaagctttgtttataaactatccacatttacaa 219

                                                                       
Query: 365 acattgttcagtactctttttctgttttttatttttttgctttcttttttgctttctttt 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 218 acattgttcagtactctttttctgtttttt-tttttttgctttcttttttgctttctttt 160

                                                                       
Query: 425 tttaattatttaattttgttgttgttttaaaaacagggaaacacttaaacttgtaaacct 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tctaattatttaattttgttgttgttttaaaaacagggaaacacttaaacttgtaaacct 100

                                                                       
Query: 485 atttgaacctcttgataaaatcatgcagcagagttttagggagagtttacaaatgtgaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  atttgaacctcttgataaaatcatgcagcagagttttagggagagtttacaaatgtgaag 40

                                                  
Query: 545 atacctagttcctttttatttcaataatcatgttacctg 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  atacctagttcctttttatttcaataatcatgttacctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)