BAC Information

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BAC

Clone NameMSMg01-408E18
Chromosome18 (Build37)
Map Location 70,262,605 - 70,393,815
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408E18.T7 (MSMg01no408_e18.b1)MSMg01-408E18.TJ (MSMg01no408_e18.g1)
ACCAG506048AG506049
length785769
length of high quality
(start - end)		433 (40 - 472)493 (70 - 562)
definitionCHROMAT_FILE: MSMg01no408_e18.b1 PHD_FILE: MSMg01no408_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:14 2005CHROMAT_FILE: MSMg01no408_e18.g1 PHD_FILE: MSMg01no408_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,262,605 - 70,263,033)(70,393,323 - 70,393,815)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCAATAAGACTCCATCCCAAATAAAGCCCTCTACTGTTCTATGGGTAACT
ACCAATAGGGAAGGGAGGATGGAAAGGAAGTGTGTACATGAGACATGAGA
TAACAAAGATGGGTGTCTTATTAGAGATGATAAATGCCACAGACAGCCAG
AATTGAGAACATATAAGTCTTCCCCACTCGACACAGTTGTCCCTCAGTAT
CTATGGCAAATTAGTTGCAGGCGTCCCCAGTCTATCCCCAAAAGGCACCC
AAGTCTGTCTTATAAAATGTCCATCACATAAAAACTACACACATCTCCAG
GGATGCTTTAAATCAAACTAGCAAAATGTAAATGCTATTTAAATAGTTGT
TGTCGTATATTTTTTAGAGACCTACATGAAGGAGGAAGGAAGTCTGTACA
GGTTCCGTACATATGTGTTTGTTTTTGTATTTTCAAGCCATGCTTGTTTA
AATCCATGGATACAGAACTCAAGAGAGAAAAGCCACTGTATGCCTTTACC
TTGATGCCAACCAAGAGTGCCAACGAGTTTCAATTATTCTTGGCCTTTAT
CCACCCTGGCCACTTGAATCTAAGATAAAAACCTTGCTTAAGCCCGGAAC
ACCTGTTAACCTTTTGTTTACCCCCTTTTTCTTACCAAGAATCAACGGGT
TGTATTTTTTTAAAAAACCGAAAGTGGCGGGTCTCTTGAATATTTTCATT
GGGATAATATTTTCCCCCTTTTTCTCTTGTAGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGAGATCATTGCCACAAGAACATGTTAAT
AACCCATGTGCAGTTAAAACGTGATGACATTCAACATGTGGGCTACAGTG
TTCTGGTCTAGAGCCTGGACAAGGGCAAGAAATGAGCTCAGATATTTCAT
CCTGTCTTTCTTCTCCCTGACCGAAGTGTTCTTTTTTGTTTGTTTTTTGT
TTTTTGCTTTTTTTGTAAATTGAAAATAGATTGTTTTCATGTAATATACA
TTTTCAGCAATTTCTTCTCCATCTCCTCCCAGATCTTTCTTATCTCCCTA
TCCACGCATTGACCAAAATACACACCCAACCAGAGTGTTCTTATGTAAAG
ATTTCTTGTGAGAAATGGAAGAATCTCACAAAGTAATAGCTTTCTTCCTA
GAACACTATAAGCTGTGACTCTTATACTGGGCATAAAAGACTAAAAGAGA
TTTGGAGTTTTTCTTTTTTACCTCTTAGTAGCACAGCTCTCAGTGTGTGT
GTGTGTGTGTGTGNGTGTNNNNNNNNNNNNNNNNNNNNNNNTTTTNNTNN
NNTTNTTTTTTTTTTTNTTTTTNTTTTTTTTNTTTNTTTTTTNNTTTTTT
TTTTTTTTTTTTNTTTTNNTTTNTTTTTTTTTTTTTTTTTNNTTTTTTTT
TTTTNTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTNNTTNNTTTTT
TTTTTTTTTTTTNTTTTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_e18.b1 MSMg01no408_e18.b1 CHROMAT_FILE:
MSMg01no408_e18.b1 PHD_FILE: MSMg01no408_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:14 2005
         (433 letters)



>mm_chr18_70262401_70263233
          Length = 833

 Score =  698 bits (361), Expect = 0.0
 Identities = 412/429 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaataagactccatcccaaataaagccctctactgttctatgggtaactacc 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 205 gaattcagcaataagactccatcccaaataaagccctctactgctctatgggtaactact 264

                                                                       
Query: 65  aatagggaagggaggatggaaaggaagtgtgtacatgagacatgagataacaaagatggg 124
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatagggaagggacgatggaaaggaagtgtgtacatgagacatgagataacaaagatggg 324

                                                                       
Query: 125 tgtcttattagagatgataaatgccacagacagccagaattgagaacatataagtcttcc 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tgtcttattagagatgataaatgccacagacagccagaaatgagaacatataagtcttcc 384

                                                                       
Query: 185 ccactcgacacagttgtccctcagtatctatggcaaattagttgcaggcgtccccagtct 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 385 ccactcgacacagctgtccctcagtatctatggcaaattagttgcaggcatccctagtct 444

                                                                       
Query: 245 atccccaaaaggcacccaagtctgtcttataaaatgtccatcacataaaaactacacaca 304
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccccaacaggcacccaagtctgtcttataaaatgtccatcacataaaaactacacaca 504

                                                                       
Query: 305 tctccagggatgctttaaatcaaactagcaaaatgtaaatgctatttaaatagttgttgt 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 tctccagggatgctttaaatcaaactagcaaaatgtaaatgctttttaaatagttgttgt 564

                                                                       
Query: 365 cgtatattttttagagacctacatgaaggaggaaggaagtctgtacaggttccgtacata 424
           ||||| || |||||||| ||||||||||||||| |||||||||||||||||| |||| ||
Sbjct: 565 cgtatgttgtttagagaactacatgaaggaggagggaagtctgtacaggttctgtacgta 624

                    
Query: 425 tgtgtttgt 433
           |||||||||
Sbjct: 625 tgtgtttgt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_e18.g1 MSMg01no408_e18.g1 CHROMAT_FILE:
MSMg01no408_e18.g1 PHD_FILE: MSMg01no408_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:14 2005
         (493 letters)



>mm_chr18_70393143_70394035
          Length = 893

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagatcattgccacaagaacatgttaataacccatgtgcagttaaaacgtgatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcagagatcattgccacaagaacatgttaataacccatgtgcagttaaaacgtgatgaca 614

                                                                       
Query: 61  ttcaacatgtgggctacagtgttctggtctagagcctggacaagggcaagaaatgagctc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttcaacatgtgggctacagtgtcctggtctagagcctggacaagggcaagaaatgagctc 554

                                                                       
Query: 121 agatatttcatcctgtctttcttctccctgaccgaagtgttcttttttgtttgttttttg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 553 agatatttcatcctgtctttcttctccctgacccaagtgttcttttttgtttgttttttg 494

                                                                       
Query: 181 ttttttgctttttttgtaaattgaaaatagattgttttcatgtaatatacattttcagca 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttttttgttttttttgtaaattgaaaatagattgttttcatgtaatatacattttcagca 434

                                                                       
Query: 241 atttcttctccatctcctcccagatctttcttatctccctatccacgcattgaccaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 433 atttcttctccatctcctcccagatctttcttatctccctatccatgcattgaccaaaat 374

                                                                       
Query: 301 acacacccaaccagagtgttcttatgtaaagatttcttgtgagaaatggaagaatctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acacacccaaccagagtgttcttatgtaaagatttcttgtgagaaatggaagaatctcac 314

                                                                       
Query: 361 aaagtaatagctttcttcctagaacactataagctgtgactcttatactgggcataaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaagtaatagctttcttcctagaacactataagctgtgactcttatactgggcataaaag 254

                                                                       
Query: 421 actaaaagagatttggagtttttcttttttacctcttagtagcacagctctcagtgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actaaaagagatttggagtttttcttttttacctcttagtagcacagctctcagtgtgtg 194

                        
Query: 481 tgtgtgtgtgtgt 493
           |||||||||||||
Sbjct: 193 tgtgtgtgtgtgt 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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