BAC Information

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BAC

Clone NameMSMg01-408H23
Chromosome18 (Build37)
Map Location 87,840,912 - 87,841,440
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408H23.T7 (MSMg01no408_h23.b1)MSMg01-408H23.TJ (MSMg01no408_h23.g1)
ACCAG506202AG506203
length743372
length of high quality
(start - end)
531 (66 - 596)---
definitionCHROMAT_FILE: MSMg01no408_h23.b1 PHD_FILE: MSMg01no408_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:30 2005CHROMAT_FILE: MSMg01no408_h23.g1 PHD_FILE: MSMg01no408_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAAAGGGTTTACAGTTCATATGTTCATCTTGTTAACTGCAGGCCATGGA
CACCTAATTAATGAGTTTCAATCGTAATCGTAACTCTGCTTCAATTATGT
TGTCAGGATAAGGTCTCAAGTAAGAAGATTATAGCACAATGCAAACAATT
TACAAATATGCATGTTTGTTAGTTTGTACATGAAGAACAGTATATGTTTT
TAAAATATGTTTAAAGAACATGTTTTGTCCATATTTTATCAAAAATGTGC
ATTATGTGTAATGTCTATGAAGGTACCTGAATTAGGAAGACTCAGAAACG
TAGCTTTCCAATATCAGGCAGCAGACAGAATAAGGCACAGAACACTAATT
TCTTTTATTGTCCAGATATTTGAAAGATCCATACTAAGTATTTAAATTAT
CTCAGGAACTTCCCATAAAAGCAGACTGGAGACAAATACTTTAAACAAAT
GGCTCTATAATTGTAAATATTTGAGACACTTGGAGAACCATGACACTTGA
ACAAAATTCTCAGTGGGCATCATAACAAGTAAGTCTAAAATTCCCCTGGC
CCTGCATGGAGTCTACCATGACAGGTCTATCATACAGGGCTAGGATTTTT
ATATCTTCATTTCTTCGGTTGGTTTCCCGTTGATCCTAAATCATGACAAT
TGTACCACGGTTTGGCGCATATAACACTTTTTCCTTCTGTATT
GCGGGGCGCTCATTAGGCAAAGTCGCGATCCGTAACGCCGATTTATGTCC
AACATGGGCTTAAATTGAATACTTGCCTGACGACTTCTGGACGGTGAAGA
CTGCAAAAGCTATCAGCCTTTCTCCTAAAATCTCATAAGCCCTGGCCCAA
AACAAATCCCCGGAAAGGCCCCCCCCTTTTCCCGGGGCAAGGGAAAAAGG
GGGTCCCCTAAAAAATTTTTAAAGAAAAACCCTTTTTTTTTGGCCCCCCC
CGGGGGGTATCCCCAAAAAAAAAACCCTTTCCCCCCAAAAAAATAATGGG
GGGGCTTTTTTCCCCCCCCCTCCCTCCCCCCCCTCTTTCCTTTCCCTTTC
CTACCCCCCCTCCTCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_h23.b1 MSMg01no408_h23.b1 CHROMAT_FILE:
MSMg01no408_h23.b1 PHD_FILE: MSMg01no408_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:30 2005
         (531 letters)



>mm_chr18_87840712_87841640
          Length = 929

 Score =  953 bits (493), Expect = 0.0
 Identities = 521/531 (98%), Gaps = 2/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatatgttcatcttgttaactgcaggccatggacacctaattaatgagtttcaatcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 729 ttcatatgttcatcttgttaactgcaggccatggacacctaattaatgagtttcaatagt 670

                                                                       
Query: 61  aatcgtaactctgcttcaattatgttgtcaggataaggtctcaagtaagaagattatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 669 aatcgtaactctgcttcaattatgttgtcaggataaggtctcaagtaagaagactatagc 610

                                                                       
Query: 121 acaatgcaaacaatttacaaatatgcatgtttgttagtttgtacatgaagaacagtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acaatgcaaacaatttacaaatatgcatgtttgttagtttgtacatgaagaacagtatat 550

                                                                       
Query: 181 gtttttaaaatatgtttaaagaacatgttttgtccatattttatcaaaaatgtgcattat 240
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtttttaaa--atgtttaaagaacatgttttgtccatattttatcaaaaatgtgcattat 492

                                                                       
Query: 241 gtgtaatgtctatgaaggtacctgaattaggaagactcagaaacgtagctttccaatatc 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 491 gtggaatgtctatgaaggtacctgaattaggaagactcagaaacgtagctttacaatatc 432

                                                                       
Query: 301 aggcagcagacagaataaggcacagaacactaatttcttttattgtccagatatttgaaa 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aggcagcagacagaataaggtacagaacactaatttcttttattgtccagatatttgaaa 372

                                                                       
Query: 361 gatccatactaagtatttaaattatctcaggaacttcccataaaagcagactggagacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gatccatactaagtatttaaattatctcaggaacttcccataaaagcagactggagacaa 312

                                                                       
Query: 421 atactttaaacaaatggctctataattgtaaatatttgagacacttggagaaccatgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atactttaaacaaatggctctataattgtaaatatttgagacacttggagaaccatgaca 252

                                                              
Query: 481 cttgaacaaaattctcagtgggcatcataacaagtaagtctaaaattcccc 531
           |||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 251 cttgaagaaaattctcagtgggcatcataacaagcaagtctaaaagtcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space:   478799
Effective search space used:   478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)