BAC Information

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BAC

Clone NameMSMg01-410K03
Chromosome18 (Build37)
Map Location 42,536,500 - 42,536,999
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
Downstream genePou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410K03.T7 (MSMg01no410_k03.b1)MSMg01-410K03.TJ (MSMg01no410_k03.g1)
ACCAG507836AG507837
length745741
length of high quality
(start - end)
304 (337 - 640)503 (81 - 583)
definitionCHROMAT_FILE: MSMg01no410_k03.b1 PHD_FILE: MSMg01no410_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:26 2005CHROMAT_FILE: MSMg01no410_k03.g1 PHD_FILE: MSMg01no410_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGA
GATGGGCGGAATTCTACCAGATCTCTAAGGAAGAGCTAATAACAATACTT
CTTAAACTTTTCCACAAAATAGAAACAGAAGAAACACTACCTAATTCATT
CTATGAAGCCACAGTTACTCTGATACCTAAACCACACAAAGACTCAACAA
AGAAAGAGAACTTAAGGCCAATTTCACTCATGAATATTGATGCAAAAATA
CTCAATAAAATTTTCACAAACTGAATCCAAGAATACACTAAAACCATCAT
TCATCTTAGGGATGCAGGGATGGTTCAATATTTGATAATCCATCAACGTA
ATCCACTATATAAACAAAGTCAAAGAAAAAATCACATGATCATCTTATTA
GATGCTGAAAAAGCATTTGACAAAATCCAACACCTCTTCATGCTAAAAGT
CTTGGAGAGATCAGAAATTTAAGGCACATACCTCAACATAATAAAAGCAA
TTTACAGCAAACTAACAACCAATATCAAATTAAATGGAGAGAAACTTTGA
AGCAATCCCACTAAGATCAGGGACAAGACAAGGCTGCCCACTCTCTCCCT
ATTTATTCAATATAGTACTCGAAGTCCCAGCCAGAGCAGTTAGACAACAA
AAGGAGATCCAGGGGATACTACTTGGAAAGGTAGAAGTCAAGGTATCACT
ATTTGCAGATGATGTGATAGTATACCTAAGCCACCACCAAAATTC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTTCTCCTATCTTTTG
GCACCTGGGAAGACCTGATTTGGGGTGATGTGACTATTTCGTGCAAGATA
AGGCCGTTGCAAGTTTGATTACTCAGGTCTGTTCTGAGCTGACACAATTT
GGCTCATTTATTTATTTACATATGGAACATATTGGTAATTGTTTAAATTC
TGAGCACACACTAGATGCTATCCATGCACCATGTCAGGCATTGAGACTCA
AGTAATTTACATACAGTTCCCATCTTCAGGGTAAGGAGGTAGGTATAGGA
TTGCATTGTTAAAAATGCTGCCACCATCCCTTCAGGAGACTGACTTATTT
GTATTTAGTCACCCATCTCAAATAGCCCCCTAGACAGATCTTCCTCAATG
ACATCCCTAGAGAACACTGACCAGTGACTGTCACACCACCCCATGTTTCC
TTCCTAGATCTTCTTGTCCTGTTTGCAAATGACATGACCACATCTTGCTC
ATCTCTGTAAACCTGGAATAAAGAACAGGACCCAGTCTGCAGGAGGAGTA
CAGGAAATCTCCTTTCATAAATTAATGAATACAATACCCTACACCCTTAG
TGGTGGTCAGAGAGTTCAGAAGACGGGCTTCCTATCCTACCTGGGATGGT
TGAAAAGCAAGGGGATTCTTTGTAGAAAAGCTCCTTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_k03.g1 MSMg01no410_k03.g1 CHROMAT_FILE:
MSMg01no410_k03.g1 PHD_FILE: MSMg01no410_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:26 2005
         (503 letters)



>mm_chr18_42536297_42537199
          Length = 903

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tcttctcctatcttttggcacctgggaagacctgatttggggtgatgtgactatttcgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcttctcctatcttttggcacctgggaagacctgatttggggtgatgtgactatttcgtg 644

                                                                       
Query: 64  caagataaggccgttgcaagtttgattactcaggtctgttctgagctgacacaatttggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 caagataaggccgttgcaagtttgattactcaggtctgttctgagctgacacaatttggc 584

                                                                       
Query: 124 tcatttatttatttacatatggaacatattggtaattgtttaaattctgagcacacacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcatttatttatttacatatggaacatattggtaattgtttaaattctgagcacacacta 524

                                                                       
Query: 184 gatgctatccatgcaccatgtcaggcattgagactcaagtaatttacatacagttcccat 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 523 gatgctatccatgcaccatgtcaggcattgagattcaagtaatttacatacagttcccat 464

                                                                       
Query: 244 cttcagggtaaggaggtaggtataggattgcattgttaaaaatgctgccaccatcccttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cttcagggtaaggaggtaggtataggattgcattgttaaaaatgctgccaccatcccttc 404

                                                                       
Query: 304 aggagactgacttatttgtatttagtcacccatctcaaatagccccctagacagatcttc 363
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 403 aggagactgacttatttgtatttagtcacccatctcaaatagccccctggacagatcttc 344

                                                                       
Query: 364 ctcaatgacatccctagagaacactgaccagtgactgtcacaccaccccatgtttccttc 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcaatgacgtccctagagaacactgaccagtgactgtcacaccaccccatgtttccttc 284

                                                                       
Query: 424 ctagatcttcttgtcctgtttgcaaatgacatgaccacatcttgctcatctctgtaaacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctagatcttcttgtcctgtttgcaaatgacatgaccacatcttgctcatctctgtaaacc 224

                               
Query: 484 tggaataaagaacaggaccc 503
           ||||||||||||||||||||
Sbjct: 223 tggaataaagaacaggaccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)