BAC Information

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BAC

Clone NameMSMg01-412K13
Chromosome18 (Build37)
Map Location 22,304,037 - 22,304,274
singlet/doubletsinglet
Overlap gene4921528I01Rik
Upstream geneGm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4, LOC100040579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412K13.T7 (MSMg01no412_k13.b1)MSMg01-412K13.TJ (MSMg01no412_k13.g1)
ACCAG509379AG509380
length713727
length of high quality
(start - end)
240 (84 - 323)525 (86 - 610)
definitionCHROMAT_FILE: MSMg01no412_k13.b1 PHD_FILE: MSMg01no412_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:06 2005CHROMAT_FILE: MSMg01no412_k13.g1 PHD_FILE: MSMg01no412_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTTTTCATATACCTGGTGTGATGAATGCATTCTA
TAGGGAGTTAAGCATTGTATAATACAGAGAANACGTCCAAGAATTTCCTA
CTGTGCCCCTTCGTATTTATAGTACTGTTGTTCTTTTCAAGGAGAGCAGC
TTTACTATGTAGCTTCTTAGATTTTCTTTTATATTGAGTCAGTTCCTTCA
AACTATATATGAATTATATGCATATTTCCGCACACTGAAATGTTTGCTGT
TTGTTTTCTAAAGAAAATGCCTGAATTTATTTTTGTCAGAATTCTTCTTC
TCCAGACATGAGGATAATAGGCTTTATGAAAGTAAATCAACAAATACAGA
AGGTGAGGTCTGAACATGAGCCATGTAGAGAACGTTCTGTCTGAGTTTGT
GTTCACTCAGTTGCTAATTCGTGATGTCAGCTATGTGATTTCACTAAGAA
ATAAATACTATGTATTCTTATTAACATATAATGGGAGATATTTAAAATAT
AATATTTTAATATATTATGCCATTCCCGAGTAGCTAGAAATCATCATTGC
CGGGAATTTTTTCTAATTACTGCCACTTTGTTTTTGAGTTCTGTTATCAC
ATGGTTTATTTTATTCTTAAGTTCTCCTATCCTTGGCTATCCGAGAACTT
CCCCTTGCCTGTG
NAAGAAANNCCAATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATAC
CGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCTTTAATCATCAG
AGAAATGCAAATCAAAACAAACCTGAGATTCCATCTCATGCCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCAGTTCCTCTTAAAATTGGAAATAGTACTAC
CGGAGGAACCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCA
ACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA
TACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA
AAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACACAATCACCAAAGAACTCACAGAATATGTACT
CACTGATAAGTGGATATTAGCCCAGAAATTAGTATAGGGAGATATAAAGT
ACAATTTGCAAAACCCCTGAACTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_k13.b1 MSMg01no412_k13.b1 CHROMAT_FILE:
MSMg01no412_k13.b1 PHD_FILE: MSMg01no412_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:06 2005
         (240 letters)



>mm_chr18_22303837_22304476
          Length = 640

 Score =  439 bits (227), Expect = e-128
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgatgaatgcattctatagggagttaagcattgtataatacagagaanacgtccaagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 438 gtgatgaatgcattctatagggagttaagcattgtataatacagagaaaacgtccaagaa 379

                                                                       
Query: 61  tttcctactgtgccccttcgtatttatagtactgttgttcttttcaaggagagcagcttt 120
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 attcctactgtgccccttcgtatttatagtactgttgttcttttcagggagagcagcttt 319

                                                                       
Query: 121 actatgtagcttcttagattttcttttatattgagtcagttccttcaaactatatatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 actatgtagcttcttagattttcttttatattgagtcagttccttcaaactatatatgaa 259

                                                                     
Query: 181 ttatatgcatatttccgcacactgaaatgtttgctgtttgttttctaaagaaaatgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttatatgcatatttccgcacactgaaatgtttgctgtttgttttctaaagaaaatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)