BAC Information

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BAC

Clone NameMSMg01-413P23
Chromosome18 (Build37)
Map Location 89,178,193 - 89,178,683
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413P23.T7 (MSMg01no413_p23.b1)MSMg01-413P23.TJ (MSMg01no413_p23.g1)
ACCAG510397AG510398
length746762
length of high quality
(start - end)		490 (60 - 549)487 (64 - 550)
definitionCHROMAT_FILE: MSMg01no413_p23.b1 PHD_FILE: MSMg01no413_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:52 2005CHROMAT_FILE: MSMg01no413_p23.g1 PHD_FILE: MSMg01no413_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCTT
AAATGGCGAACACAAATCAATTTCTGCTCAAATAAATTAAGTTGGAATTG
AATTAGTGTTATACTGTTTCATGTGTAGTTATTAATCCCTGCATTGCATG
CTTATATATGTCAGAGAAAAAGTTTCTGTCCTCAGGAGTGTGTTGGCTTC
ATTCTTTACTTCATAGAAGTGGTGTAATTCTGGGTATAAGAGGACAAAAG
TAACCAATCTCCCAGACTGGGACAAGGAGGCCATATTTGGACTTGAGACA
TTTTGGGCAGAGAGAAATTGAATTGAAGAAAACATGATATGTTGATGTGA
TGGAAAATACAACTTTCTTGTGAAAAAAATCCATAGATTTTTGATAGAGA
ATTAATAAGATAGGCTCAACTAACATTATAGTATACAGTTTGTTTTTTTT
TAAACAAATATTAGAAAATATTAACTTAATATTTTTTTTCTTCATCAAGG
CGAGTGAGTTTTTGCCAGAGTCCATGTCAGCAGCATTATTTTTTGTCTCC
TTGGACATGCCTATTTCTTTGGAATATCCAGAGATTCATGACACAGTTGT
GGCTTATTTGGAACAGCTGGATTCTGAAAATACAGCATTTATAAGCGAAC
TGCAGAGGCTGTTTATTCAATTGAATGCCCTGTTACCTCCCTATCTGGAG
GGGGAAAGAGGGAAAAAATTTTAAAAAAACCCCCTAAATCTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGGAGGAAACTTTAAGACACCACAACTATAATCTG
GGGCATGGTTGCAGACAGTTGCCATCAGGCATGATTAGAATGAAAGCTAT
TAGCAAAAAGCAGAACAGAAAGATGTGGGAAATGTCCGATTTAACCAGAA
AAGAAGAATGTTTAATGTTTCTGGCAAAGAAACGTCAAGAAAGTGCTTCT
GTTGCTAAGGATTAACACTCCACAGGATGATCCACAAGTTTTACATTAGA
GTATTAGAAGGGGCCTTTGAGGATGAGTCCCCACCCACTCATACAGACTC
ATTTGAAAAGCTTTTCTTTGAAAGTGAGGGTACCTGGAATTAAAGAGGCT
ACAGTGTACCCTGCTGAGAAAGGATGACCAATGGAGTCATCCTTTTTTTT
GAGTTCGGCGATCCTGGTACTCAGAGACTGACACAGCCATGCTGAAAGGG
TGTTCTGTTATTTCTTAAACTGGAAGAACAAAGCTTCACCATCCCTGTGG
GTCTGTAGGCATGAAGAATGGCAGACCTACAGAGTTACAGAAGCTGGCAC
AAAGACATTTAAGGTAATCTTTGGGAGGACAGATAATGGTGGAACTGGGC
TAGATTTTCTGCAGGGAAATCTTGCAAACACATATGGGGAAGCTGTAAAA
ATAACCCCTAAGGTCCCGGAAAAGGGAAGCATTTGTTGTAGAAAACTTGC
GGAAATGAAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_p23.b1 MSMg01no413_p23.b1 CHROMAT_FILE:
MSMg01no413_p23.b1 PHD_FILE: MSMg01no413_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:52 2005
         (490 letters)



>mm_chr18_89177993_89178882
          Length = 890

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%), Gaps = 1/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaaatcaatttctgctcaaataaattaagttggaattgaattagtgttatactgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaaatcaatttctgctcaaataaattaagttggaattgaattagtgttatactgttt 260

                                                                       
Query: 61  catgtgtagttattaatccctgcattgcatgcttatatatgtcagagaaaaagtttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgtagttattaatccctgcattgcatgcttatatatgtcagagaaaaagtttctgt 320

                                                                       
Query: 121 cctcaggagtgtgttggcttcattctttacttcatagaagtggtgtaattctgggtataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaggagtgtgttggcttcattctttacttcatagaagtggtgtaattctgggtataa 380

                                                                       
Query: 181 gaggacaaaagtaaccaatctcccagactgggacaaggaggccatatttggacttgagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggacaaaagtaaccaatctcccagactgggacaaggaggccatatttggacttgagac 440

                                                                       
Query: 241 attttgggcagagagaaattgaattgaagaaaacatgatatgttgatgtgatggaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttgggcagagagaaattgaattgaagaaaacatgatatgttgatgtgatggaaaata 500

                                                                       
Query: 301 caactttcttgtgaaaaaaatccatagatttttgatagagaattaataagataggctcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactttcttgtgaaaaaaatccatagatttttgatagagaattaataagataggctcaa 560

                                                                       
Query: 361 ctaacattatagtatacagtttgttttttttt-aaacaaatattagaaaatattaactta 419
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ctaacattatagtatacagtttgttttttttttaaacaaatattagaaaatattaactta 620

                                                                       
Query: 420 atattttttttcttcatcaaggcgagtgagtttttgccagagtccatgtcagcagcatta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atattttttttcttcatcaaggcgagtgagtttttgccagagtccatgtcagcagcatta 680

                      
Query: 480 ttttttgtctc 490
           |||||||||||
Sbjct: 681 ttttttgtctc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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