BAC Information

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BAC

Clone NameMSMg01-415D08
Chromosome18 (Build37)
Map Location 40,467,682 - 40,467,921
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415D08.T7 (MSMg01no415_d08.b1)MSMg01-415D08.TJ (MSMg01no415_d08.g1)
ACCAG511321AG511322
length795732
length of high quality
(start - end)
204 (65 - 268)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no415_d08.b1 PHD_FILE: MSMg01no415_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:31 2005CHROMAT_FILE: MSMg01no415_d08.g1 PHD_FILE: MSMg01no415_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTTACTCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGT
CAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCA
AATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCC
TACCCCTCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGG
GAGGGGGAGGTGCTGTGAGCGAATTTAGACAGCTTGAAGAACTAGATAGC
TGGAGACTTCCTTTTTTTTCTTATTTTACCGATCATATGGCGCAAAGAGG
GAACTTGTCTCTGCTCAGGTACGTACTGTCATACCGTCTTCTTACTGCTG
CTTTCCATTCCTGTTCTTATCAACTCTTCGCTTTCCGATCCCACTATTCG
CTCTTCCTTTTTTTCTATTATTTCGACTGATTCTTCTTGACACACTCCGT
CGTTTTCTCGTCTCCTCCTCTTCATCGGGTGTTTTTTTTCTCCTCTTCCT
TTTTCCGCGCAAACATTTACACTTCTCCTCCCTCCCTTTCTTCCTCCTTT
TTTCTTTTTTCCGGCCTTTCTCCCGCTTCCGCTTTTATCTTTTTTATTTC
TCCATTTCTCCACCTCCCTCCCCGTTTTTCCTTTTTTCGCCTCCCCCTTC
CCCTTATTTTTTTTTTCCCCGTTTTTTTTTTCTTTTTTTCTTCCCTCCCT
TACGCTCCGTTTTTTTCTCCTCTTTCCTCTATTCCTTTCCTGTTN
CATGAAGTGGGAGGCCTGGNGGCCGCCTGTTCTCATATTTAGGTGAACTA
TAGAAGTACAAGAGAAAATCTCTGAACTCACTGTCCTTTCAGGTCCACAT
TTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTA
GAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGG
AAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCTTCA
GTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAAT
TTCTACTTCTGGTTCANTTTTTTTATTTTTTTTTTTTTTGAGACAGAGTT
TCTCTGTATACCCCTGGATGCCCTGGAACTCACTTTGTATACCATGCTGG
TCTCGATCTCATAAATACACTTGCCCCTGCCTCCCGAGTGTTGGGTTCAT
CTGCCTGTTCCACTACTTCTTGTTCTCATGCCCTATTGCTTCCTTCCTTT
CTCACTTTCCCTCTCCATCCTCTCTTCCTCCTCCTACCTTTTCTCTCTTT
TCTCTCCCCCGTTCTCTCCCTTTTCCTTCTTTCGCTACTTCCTTCCCCGC
TCACCCTCGCTTCCTTCCTCCTTCTCCTTCTTACCGTCTTCGTCTTTTTT
TTCTTCTCCCTCTCCACTATCGCTATTTCCTCCTTTTCCATCCGTTTTCT
CCTTATTCTTTCCCTTTTCTCTTCTCACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_d08.g1 MSMg01no415_d08.g1 CHROMAT_FILE:
MSMg01no415_d08.g1 PHD_FILE: MSMg01no415_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:31 2005
         (283 letters)



>mm_chr18_40467482_40468163
          Length = 682

 Score =  358 bits (185), Expect = e-103
 Identities = 227/241 (94%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaac 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 tctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaac 381

                                                                       
Query: 61  caaacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccct 120
           ||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||
Sbjct: 380 caaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactct 322

                                                                       
Query: 121 aacagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtctt 180
           ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |  
Sbjct: 321 aacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccag 262

                                                                       
Query: 181 cagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctactt 240
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 261 cagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctactt 202

            
Query: 241 c 241
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)