Query= MSMg01no416_d21.b1 MSMg01no416_d21.b1 CHROMAT_FILE:
MSMg01no416_d21.b1 PHD_FILE: MSMg01no416_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:49 2005
(546 letters)
>mm_chr18_71162777_71163722
Length = 946
Score = 967 bits (500), Expect = 0.0
Identities = 529/542 (97%), Gaps = 6/542 (1%)
Strand = Plus / Plus
Query: 5 gaattcactctaccagtgaactggtggcctgtagctgatcattggcgacatcctttactt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctaccaatgaactggtggcctgtagctgatcattggcgacatcctttactt 264
Query: 65 atcttccttctttgttttcactcgttcttttgcactgggaatgagttcatagtctcattc 124
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 265 atcttccttctttgttttcactcattcttttgcattgggaatgagttcatagtctcattc 324
Query: 125 atgctgtgcaaacactctacttagcatatctaggaaaccatcagtcagctctttttgttg 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 atgctgtgcaaacactctacttagcatatctaggaaaccatcagtcagttctttttgttg 384
Query: 185 tttttgctgttgttgttgttgttttaagatgaggtcttgctaaagaatccatgttagcct 244
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttgc------tgttgttgttttaagatgaggtcttgctaaagaatccatgttagcct 438
Query: 245 tcaacatgggatccccctgcttcagattctggagtagctacgattatattctgtaccatc 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaacatgggatccccctgcttcaggttctggagtagctacgattatattctgtaccatc 498
Query: 305 atccctggttcccatatttcatttttggtttttgttgaaaaaaaatcttgcaatatatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atccctggttcccatatttcatttttggtttttgttgaaaaaaaatcttgcaatatatct 558
Query: 365 ccaaaaatccatgcatagaaaatgtttcaaaataactttattggtctaaactattgggtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccaaaaatccatgcatagaaaatgtttcaaaataactttattggtctaaactattgggtt 618
Query: 425 tttttcaactttccataattaaatttgccttggacaaaaatgttctagcctgaaaatcac 484
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 tttttgaactttccataattaaatttgtcttggacaaaaatgttctagcctgaaaatcac 678
Query: 485 cctttcctttgcattttgaaggtatttttgattttgtcagtgttaggagcattttggggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cctttcctttgcattttgaaggtatttttgattttgtcagtgttaggagcattttggggg 738
Query: 545 at 546
||
Sbjct: 739 at 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_d21.g1 MSMg01no416_d21.g1 CHROMAT_FILE:
MSMg01no416_d21.g1 PHD_FILE: MSMg01no416_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:49 2005
(422 letters)
>mm_chr18_71210033_71210853
Length = 821
Score = 704 bits (364), Expect = 0.0
Identities = 397/408 (97%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 15 acacacacacacagaggcccaaccacctgtcttgtctacccaacaagggttaaggtatac 74
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 724 acacacacacacacaggcccaaccacctgtctcgtctacccaacaagggttaacatatac 665
Query: 75 ttacatgcatgcacatgtaacataccataaatatagacaaacaggtgaatgaataaaaat 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttacatgcatgcacatgtaacataccataaatatagacaaacaggtgaatgaataaaaat 605
Query: 135 atagccctttaggcacaatgaacctgactcagtaataaaaaggattagaattattgtatt 194
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atagccctttaggcacaatgagcctgactcagtaataaaaaggattagaattattgtatt 545
Query: 195 tgtagaaaaaaaatcaataggcctggaaatcatctaggacaataagccagatgcaaacat 254
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtag-aaaaaaatcaataggcctggaaatcatctaggacaataagccagatgcaaacat 486
Query: 255 actattttctaaacaaactctcagaaggttgtgctgaagcagcagggtaaactctttcct 314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 actattttctaaacaaactctcagaaggttgtgctgaagcagcaaggtaaactctttcct 426
Query: 315 tttgtccttatgactgtgctgaacctgcatgataaactttccttttgtcctttcatgatc 374
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttgtccttatgactatgctgaacctgcatgataaactttccttttgtcctttcatgatc 366
Query: 375 atgcttcagaaagcacttcttatacacatccttgtatgtgggaagaca 422
||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 atgtttcaaaaagcacctcttatacacatccttgtatgtgggaagaca 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 821
Length adjustment: 9
Effective length of query: 413
Effective length of database: 812
Effective search space: 335356
Effective search space used: 335356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
