Query= MSMg01no416_g04.b1 MSMg01no416_g04.b1 CHROMAT_FILE:
MSMg01no416_g04.b1 PHD_FILE: MSMg01no416_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:59 2005
(505 letters)
>mm_chr18_69785355_69786259
Length = 905
Score = 893 bits (462), Expect = 0.0
Identities = 492/504 (97%), Gaps = 6/504 (1%)
Strand = Plus / Plus
Query: 5 gaattcctttggg---taaccatgtagattctctttctcctatgttttgtgatgtaatct 61
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgggaaata--catgtagattctctttctcctatgttttgtgatgtaatct 262
Query: 62 gatagaatggaaagagaacattgttctgttagtagcaaaaaatatataaatgtatcacat 121
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 263 gatagaatggaaagagaacattgttctgttagtagc-aaaaatatatagatgtatcacat 321
Query: 122 atatttggtgaatcttatatatgtatgcctagtcatgaaatattctcccatgacctaccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 322 atatttggtgaatcttatatatgtatgcctagtcatgaaatattctcccatgatctaccc 381
Query: 182 actcccacgtgagttccagaatggcaataaacacagtttgggaaatcaaagtcttcattg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actcccacgtgagttccagaatggcaataaacacagtttgggaaatcaaagtcttcattg 441
Query: 242 tgaatcagttaagaaaacgtagaactatttgaatagttcctttgaaaattttaaggcttt 301
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaatcagttaaggaaacgtagaactatttgaatagttcctttgaaaattttaaggcttt 501
Query: 302 tagttagaaataagatctttgcaatggcattatctcatacctgcacgtgtttttccatat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagttagaaataagatctttgcaatggcattatctcatacctgcacgtgtttttccatat 561
Query: 362 gtaagatgtgtccgtagagatttgtatgcattagtgtttgcctctccaaatgtaactact 421
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 562 gtaagatgtgtccatagagatttgtatgcattagtgtttgcctctccagatgtaactact 621
Query: 422 gcgattgcattgcagtgtagtccttaatcatcacttggatgtggaggaagagtcctcctg 481
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 622 gcgattgcattgcagtgtagtccttaatcatcacttgggtgtggaggaagagtcctcctg 681
Query: 482 tccgctttcaagattccttgcatt 505
||||||||||||||||||||||||
Sbjct: 682 tccgctttcaagattccttgcatt 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_g04.g1 MSMg01no416_g04.g1 CHROMAT_FILE:
MSMg01no416_g04.g1 PHD_FILE: MSMg01no416_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:00 2005
(320 letters)
>mm_chr18_69964258_69964977
Length = 720
Score = 580 bits (300), Expect = e-170
Identities = 315/320 (98%)
Strand = Plus / Minus
Query: 1 atggcgagcacacagagggattactggtgattatcttttctttctctgccattactctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 atggcgagcacacagagggattactggtgattatcttttctttctctgccattacgctcc 461
Query: 61 agttctgcttcctttggtacggagttccttggtcaagggtaattgagtgaattaaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agttctgcttcctttggtacggagttccttggtcaagggtaattgagtgaattaaagaag 401
Query: 121 gatttccaggtgcatccaggggacaaggattctaaagaatcgtgcgctggtcatgtattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gatttccaggtgcatccaggggacaaggattctaaagaatcgtgcgctggtcatgtattt 341
Query: 181 tctggttcattctttcccacgtctcttcctcctagtcccctctgtcactttagagtggct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 tctggttcattctttcccacgtctcttcctcctagtcccctctgtcactttagagtggtt 281
Query: 241 atcaaaagtatagtttgcaggcttcaagcttggccaaagcaaacagaccaaaaatttggg 300
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 atcaaaagcagagtttgcaggcttcaagcttggccaaagcaagcagaccaaaaatttggg 221
Query: 301 aaatgacttatcctaatcca 320
||||||||||||||||||||
Sbjct: 220 aaatgacttatcctaatcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
