Query= MSMg01no416_g18.b1 MSMg01no416_g18.b1 CHROMAT_FILE:
MSMg01no416_g18.b1 PHD_FILE: MSMg01no416_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:02 2005
(552 letters)
>mm_chr18_58795255_58796206
Length = 952
Score = 975 bits (504), Expect = 0.0
Identities = 534/546 (97%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 7 ggaattccagtctcctacctgtttttggatcaagatgtagaattctcagctctttcagca 66
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ggaattccagtctcctggctgtttttggatcaagatgtagaattctcagctctttcagca 885
Query: 67 ccacatttgccaggtttcccaccatcatgataatagactaaacctctgaaactgtaaccc 126
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tcacatctgccaggcttcccaccatcatgataatagactaaacctctgaaactgtaaccc 825
Query: 127 agccccatttaatgtttgtaagactttgtaagacttgacttggtcatggtgtctcttcac 186
||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct: 824 agccccatttaatgttt----gcctttttaagacttgacttggtcatggtgtctcttcac 769
Query: 187 agcaataaaacactaagaaacatgttcataggaaagacattttatttgtagtcacaaatg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 agcaataaaacactaagaaacatgttcataggaaagacattttatttgtagtcacaaatg 709
Query: 247 aacagggaatggatatattagtaatttattaagggatctattagtaatttattaagggaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aacagggaatggatatattagtaatttattaagggatctattagtaatttattaagggaa 649
Query: 307 aaggagaaaaatcaaatttgcatcccactgtcccctgattgctttgcttccttcctttct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaggagaaaaatcaaatttgcatcccactgtcccctgattgctttgcttccttcctttct 589
Query: 367 tctgtttccttatcacgcctcaaaaggaaagtttccactggaatattatttccagaaaga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctgtttccttatcacgcctcaaaaggaaagtttccactggaatattatttccagaaaga 529
Query: 427 aaatcaagacgaaccttctgtgtagatctagtgatcaatggtgcaagaaagactaaaggg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaatcaagacgaaccttctgtgtagatctagtgatcaatggtgcaagaaagactaaaggg 469
Query: 487 gcttgctaagacacacccctgaggcagcctttgagtttcagattctctaagtacagaaag 546
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gcttactaagacacacccctgaggcagcctttgagtttcagattctctaagtacagaaag 409
Query: 547 aagcct 552
||||||
Sbjct: 408 aagcct 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_g18.g1 MSMg01no416_g18.g1 CHROMAT_FILE:
MSMg01no416_g18.g1 PHD_FILE: MSMg01no416_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:02 2005
(508 letters)
>mm_chr18_58617281_58618186
Length = 906
Score = 893 bits (462), Expect = 0.0
Identities = 498/510 (97%), Gaps = 4/510 (0%)
Strand = Plus / Plus
Query: 1 atggtaatgcagttgataaagaactgttttctcaccagtgataccagagcagctggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atggtaatgcagttgataaagaactgttttctcaccagtgataccagagcagctggcttg 258
Query: 61 ccacataaagaagaaaacggagtttcttgctaatatttacacaaaaatcaaataaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccacataaagaagaaaacggagtttcttgctaatatttacacaaaaatcaaataaaaatt 318
Query: 121 gattaaatccaaaactatgaaactcttaaaagcttgaggtagaaaactccaacttagaca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gattaaagccaaaactatgaaactcttaaaagcttgaggtagaaaactccaacttagaca 378
Query: 181 cataattaaaaatagtaaaaaaaaaaa-gtagactttaccaagattaaaagctgtatgca 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 cataattaaaaatagtaaaaaaaaaaaagtagactttaccaagattaaaagctgtatgca 438
Query: 240 taaaagaagctattttaaaaactcaaagacaactcacagagtaaagagtaatcttttcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaaagaagctattttaaaaactcaaagacaactcacagagtaaagagtaatcttttcaa 498
Query: 300 atcatgtatccaacaagagatttttttt-aggagattatataaatgactttttgaaatca 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 atcatgtatccaacaagagatttttttttaggagattatataaatgactttttgaaatca 558
Query: 359 gtgataaaaagacaacccaactgaaaaactgataacggcttcatttggttcagtgtggtt 418
||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||
Sbjct: 559 gtgataaaaagacaacccaactgtaaaactgataatggcttcatttggttcatt-tggtt 617
Query: 419 tctcgaggatgagttgtagtgtgtagtcatgagctagctgtcttctccctccagtatcct 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 -ctcgaggatgagtcatagtgtgtagtcatgagctagctgtcttctccctccagtatcct 676
Query: 479 ggaactgcaggaaagggcttccttgactga 508
||||||||||||||| | ||||||||||||
Sbjct: 677 ggaactgcaggaaagtgtttccttgactga 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 906
Length adjustment: 10
Effective length of query: 498
Effective length of database: 896
Effective search space: 446208
Effective search space used: 446208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
