BAC Information

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BAC

Clone NameMSMg01-417B15
Chromosome18 (Build37)
Map Location 46,686,609 - 46,687,148
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c
Downstream geneTicam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417B15.T7 (MSMg01no417_b15.b1)MSMg01-417B15.TJ (MSMg01no417_b15.g1)
ACCAG512762AG512763
length750713
length of high quality
(start - end)		543 (48 - 590)---
definitionCHROMAT_FILE: MSMg01no417_b15.b1 PHD_FILE: MSMg01no417_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:53 2005CHROMAT_FILE: MSMg01no417_b15.g1 PHD_FILE: MSMg01no417_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGAGTTTAAAGCCTTGTGTCTATGGTATTAAACTAGGTTGAG
AAGTGTTTCAACTTTATCTTGAGAAGGGATGAATCATAGGAAAACAGGTT
TGAAAACAAATCTTCAGACCTTAAACCCACGCAATTCCTTAGCACCACTG
GGAAACGTAAGCTTCATTGCAAGAAACTATGCAAAACAAAAAACATCTTT
AAAAAAATGGTCAACTTAGTTTTTACATAGTCACCTGTGTTATCCGGAAG
ATTATGTGCCTTCACATGATCAACCCCGATGTTCATACAAGTGTACACTT
GGCTTTTTTCCTTTGTCATATTCTAAACATTTCTCGTGGTTTTACACTTT
TTTTTAACCTTTTTGACATTTTTAACACATGTACATGAATGAAAATGAGG
ACATGACCACTCCTAGGTATGGTTGGGGATAGCGGCTTTATTGTCAATAT
GAGGGAGAGCACAGCCAGAGGCATCAGGAAGGTTCCAGACTGAAGAGAGA
GGAAGGAGGGATAAGTAGACCTAGAGAGGAGCTGAGGACCAAGAGACCTA
GAGGGAACCACAAGAGAGTGAGTTATACAGGAATCATAAGCTAGTGTAAG
GGAAGCCCAGCACCTGGGCTGGAGAGGTTCAGGTTAGGATAGGTGCCCGG
GTGAGACGTCCTGTCAAGAAACCCCCGGAACAATCATACCCGCCCTGTTT


CCTCTACCCCCATTCCCCCNNNNNNNNNNNCCCCCCNNNNNNCCGATGAT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXNCTCCTGATCAAATGTCTAGGAGTATAAATA
ATGATATTTATGGGAATCTCGAAGGGTGGAAATGTACTTTGGGAAGAGAG
TTTTGAGTTCAAACAGGGCATTTGGGGGACAGGGGAAAAAACCTTGAACC
GTAATTTGGGCCTTTTCCCCCCCGGAGAAAGGGGGTTAAAAAAACCCCGG
GGGGGGTGGGGGGGGGCCGGGGCGTCAAAATAAGGGGGCGCCCCCAAAAA
AAAAACACTCCCCCCACCCTCAGGAGGGGGGGGGGGGGGGGTGGGCCTTT
TTTTTTTTTCTACATAAAAAAAAATTGTGCGCGGGCGAACAATAAATATT
GGGGGGGGGGGGTGGTTGTCTTTTTCTTATAAAAAAAAAAAATGACTTTA
ATTGCTTCCGTGTCGCGAGTAANNNCATGTTTTGGGGGGCGTGTTCTGAN
GNNCCCGGGGGTTTTTTTTTTTTCCCCCCCCCCCCGGTAAAAAAAACACC
TCCGCCGGGGGGGGGAGAAAAAATAAACCACCCTTTCTCCCTGTTGGGGG
GGAGGGGAGGACCATTACCCCCCCCCCCTATTTTAATATTGTGGACGCGC
TCTGTCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_b15.b1 MSMg01no417_b15.b1 CHROMAT_FILE:
MSMg01no417_b15.b1 PHD_FILE: MSMg01no417_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:53 2005
         (543 letters)



>mm_chr18_46686405_46687348
          Length = 944

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%), Gaps = 1/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgagtttaaagccttgtgtctatggtattaaactaggttgagaagtgtttcaa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaggttaaagccttgtgtctatggtattaaactaggttgagaagtgtttcaa 264

                                                                       
Query: 65  ctttatcttgagaagggatgaatcataggaaaacaggtttgaaaacaaatcttcagacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttatcttgagaagggatgaatcataggaaaacaggtttgaaaacaaatcttcagacct 324

                                                                       
Query: 125 taaacccacgcaattccttagcaccactgggaaacgtaagcttcattgcaagaaactatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaacccacgcaattccttagcaccactgggaaacgtaagcttcattgcaagaaactatg 384

                                                                       
Query: 185 caaaacaaaaaacatctttaaaaaaatggtcaacttagtttttacatagtcacctgtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaaacaaaaaacatctttaaaaaaatggtcaacttagtttttacatagtcacctgtgtt 444

                                                                       
Query: 245 atccggaagattatgtgccttcacatgatcaaccccgatgttcatacaagtgtacacttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccggaagattatgtgccttcacatgatcaaccccgatgttcatacaagtgtacacttg 504

                                                                       
Query: 305 gcttttttcctttgtcatattctaaacatttctcgtggttttacactttttttt-aacct 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 gcttttttcctttgtcatattctaaacatttctcgtggttttacactttttttttaacct 564

                                                                       
Query: 364 ttttgacatttttaacacatgtacatgaatgaaaatgaggacatgaccactcctaggtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttgacatttttaacacatgtacatgaatgaaaatgaggacatgaccactcctaggtat 624

                                                                       
Query: 424 ggttggggatagcggctttattgtcaatatgagggagagcacagccagaggcatcaggaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggttggggatagcggctttattgtcaatatgagggagagcacagccagaggcatcaggaa 684

                                                                       
Query: 484 ggttccagactgaagagagaggaaggagggataagtagacctagagaggagctgaggacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggttccagactgaagagagaggaaggagggataagtagacctagagaggagctgaggacc 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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