BAC Information

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BAC

Clone NameMSMg01-417B23
Chromosome18 (Build37)
Map Location 61,412,354 - 61,412,820
singlet/doubletsinglet
Overlap genePde6a
Upstream geneEG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2
Downstream geneEG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417B23.T7 (MSMg01no417_b23.b1)MSMg01-417B23.TJ (MSMg01no417_b23.g1)
ACCAG512778AG512779
length776766
length of high quality
(start - end)		578 (43 - 620)470 (72 - 541)
definitionCHROMAT_FILE: MSMg01no417_b23.b1 PHD_FILE: MSMg01no417_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:54 2005CHROMAT_FILE: MSMg01no417_b23.g1 PHD_FILE: MSMg01no417_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGAGAATCAACCAAACAGGTGAAGGAATTGAACAAAACCATCCAAG
ATCCAAAGATAGAAATAGAATCAATAAAGAAATCACAAAGGGAGACAACC
ATGGAGATAGAAAACCTAGAAAAGAGACCAGGGGTCATAGATGCAAGCAT
CACCAACATAATACAAGAAATAGAAGAGAGAATCTCAGGTGCAGAAGATA
CCATAGCAAACATTGACACAACAGTCAAAGAAAATGCAAAATGTGAAAAG
CTCCTTACCCCAAACATCCAGGAAATCCAGGACACATTGAGAAGACTGAA
CATAAGGATAATAGGTATAGAAGAGAGTGAAGATTCCAAACTTAGAGGGC
CAGTAAATATCTTCAACAAAATTATAGAAGAGAACTTCCCTAACCTAAAG
AAAGAGATACCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACT
GGACCAGAAAAGAAATTCCTCAGGTCACATAATAGTCAAAACATCAAATG
CACTAAGCAAAGAAAGAATATTAAAAGCAGAAAGGGGAAAAGGTCAAGTA
ACATATAAAGGTAGATCTATCAAAATTACACCAGACTTTTCACCAGAGAC
TAAGATCCAGGGCAGATGTCATAGAGACCCTAAGAGAACACNAATACCAG
CCCAGGCTATTATATCCAACAAATCTCTCGATTACCATGATGGAGAAACT
AAGATATTCCAATAACAAAACCAATT

TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXANAAAAGTCCTCTGCAGGCGCATTCATTA
TATTGCAGATCTGTAAGGCAGGAGGGGAACAAGGCCATTGACCCGAGCTG
AGCAAGAGCCTGCAAGCCCTGCTCCCTACTCAGACCCTAAGTCCTTGACC
AAGGTAGTGCACTGTCCAAATCAGGTGGACAGATTCAAAATGGCTCAGGG
TTATTAACTGAAGGTACCAGCTAGGAAAGGTCACCTGGTAGATTTTATCT
CTATTTGTTACACCCTAAACATTTCTAGGTTTGGAAAAGCTAAGGGTACA
GCTGTCGTTATTAATAACTGCATAGTATTCCATTCTGTGGCTCTTATGCT
AAGTATTTGGATATCCAGGTACATGCATAAGGATGTGCACATACGTGTGA
GTGTGTACTCATGCATGCATGCCACACCTGTGTCTGCATGTTATGTAAAT
ACAAATATGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTNTNNNNNTGT
TTGGNGTTTTGTAATTTATAGNTNATTTGCTTTTGCCTCCTTTTGTTTAT
CATTTNACAAGTTTTTAAATTTCCCTGGCTCTCTTACATTAAAGGGTGTT
TTTTTGTCAAGAAATATTTCCCCTCCCGGTGCCGCCCCCTTATTTACCAT
TCTTTCATTTCCTCCCTCCGTTTTCTTTTTCGCCTTCTTCCCCCTGGATA
ACCCTTTTTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_b23.g1 MSMg01no417_b23.g1 CHROMAT_FILE:
MSMg01no417_b23.g1 PHD_FILE: MSMg01no417_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:54 2005
         (470 letters)



>mm_chr18_61412185_61413054
          Length = 870

 Score =  874 bits (452), Expect = 0.0
 Identities = 464/468 (99%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaaagtcctctgcaggcgcattcattatattgcagatctgtaaggcaggaggggaacaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaaagtcctctgcaggcgcattcattatattgcagatctgtaaggcaggaggggaacaag 577

                                                                       
Query: 63  gccattgacccgagctgagcaagagcctgcaagccctgctccctactcagaccctaagtc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gccattgacccgagctgagcaagagcctgcaagccctgctccctactcagaccctaagtc 517

                                                                       
Query: 123 cttgaccaaggtagtgcactgtccaaatcaggtggacagattcaaaatggctcagggtta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cttgaccaaggtagtgcactgtccaaatcaggtggacagattcaaaatggctcagggtta 457

                                                                       
Query: 183 ttaactgaaggtaccagctaggaaaggtcacctggtaga-ttttatctctatttgttaca 241
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 456 ttaactgaaggtaccagctaggaaaggtcacctggtagattttta-ctctatttgttaca 398

                                                                       
Query: 242 ccctaaacatttctaggtttggaaaagctaagggtacagctgtcgttattaataactgca 301
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 397 ccctaaacatttctaggtttggaaaagctaagggtacagctgtcattattaataactgca 338

                                                                       
Query: 302 tagtattccattctgtggctcttatgctaagtatttggatatccaggtacatgcataagg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tagtattccattctgtggctcttatgctaagtatttggatatccaggtacatgcataagg 278

                                                                       
Query: 362 atgtgcacatacgtgtgagtgtgtactcatgcatgcatgccacacctgtgtctgcatgtt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgtgcacatacgtgtgagtgtgtactcatgcatgcatgccacacctgtgtctgcatgtt 218

                                                           
Query: 422 atgtaaatacaaatatgtgagtgagtgtgtgtgtgtgtgtgtgtgtgt 469
           ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 217 atgtaaatacaaatatgtgagtgagtgagtgtgtgtgtgtgtgtgtgt 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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