Query= MSMg01no417_j23.b1 MSMg01no417_j23.b1 CHROMAT_FILE:
MSMg01no417_j23.b1 PHD_FILE: MSMg01no417_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:33 2005
(446 letters)
>mm_chr18_61495765_61496610
Length = 846
Score = 688 bits (356), Expect = 0.0
Identities = 432/478 (90%), Gaps = 40/478 (8%)
Strand = Plus / Plus
Query: 1 caaaataaaataaaatagccatgttactattttctatacctgaaaaatagggtacaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 caaaataaaataaaatagccatgttactattttctatacctgaaaaatagggtacaattt 228
Query: 61 tgcaccatagacatatacacaactacccacactgcacacacacacacacacacacacata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 229 tgcaccatagacatatacacaactacccacactgcacacacacacacacacacacacaca 288
Query: 121 cacacaca--------tacaca----cacacacatacacacaca--------tacaca-- 158
|||||||| |||||| |||||||||||||||||| ||||||
Sbjct: 289 cacacacacacacatatacacatacacacacacatacacacacacacacatatacacata 348
Query: 159 --cacacatacacacacatacacacacacacataca------tacacacaca--tacaca 208
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 349 cacacacacacacacacatacacacacacacatacacacacatacacacacacatacaca 408
Query: 209 caca--catacacacatacacacaca--cacacacatacacatacactttttcacacaca 264
|||| || ||||||||||||||||| |||||||| ||||| |||| ||||||||
Sbjct: 409 cacatacacacacacatacacacacatacacacacacacacacacaca----cacacaca 464
Query: 265 cacacacacacacacacacacttcgatggtggtctaaaggtctttatgaggttaatttga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cacacacacacacacacacacttcgatggtggtctaaaggtctttatgaggttaatttga 524
Query: 325 cccagactgcagactatgcaaccacttctgaagggatctctccatcactctgggtccaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cccagactgcagactatgcaaccacttctgaagggatctctccatcactctgggtccaag 584
Query: 385 gggcccatgagagcccagctaagtgggtttgcttcatcttaggatagagaacctgagg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gggcccatgagagcccagctaagtgggtttgcttcatcttaggatagagaacctgagg 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 252
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 8
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_j23.g1 MSMg01no417_j23.g1 CHROMAT_FILE:
MSMg01no417_j23.g1 PHD_FILE: MSMg01no417_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:33 2005
(497 letters)
>mm_chr18_61677203_61678099
Length = 897
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Minus
Query: 1 caagaggagtttgaacaagtctataaagtctactgtgccaactatgaccaggccctgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caagaggagtttgaacaagtctataaagtctactgtgccaactatgaccaggccctgctg 515
Query: 61 ctggtcaaggcgtaccagaaggagccagaactgcagaaggagatccagggcatcatcgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctggtcaaggcgtaccagaaggagccagaactgcagaaggagatccagggcatcatcgaa 455
Query: 121 gctgccatgtgagtaccatgtctggcgacagttcaagtcttgatcctgctggggtctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gctgccatgtgagtaccatgtctggcgacagttcaagtcttgatcctgctggggtctgcc 395
Query: 181 caggctgcttggggcctgtgtcagcagccaggcctctctctcagtcaggaaggccttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggctgcttggggcctgtgtcagcagccaggcctctctctcagtcaggaaggccttgct 335
Query: 241 gccagtcaatgttcaagtctcagtggtctcaagcaaggctccaagcctccttatgttcct 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 334 gccagtcaatgttcaagtctcagtggtctcaagcaaggctccaagcttccttgtgttcct 275
Query: 301 gtgtttcctgtcagtttggatttctatggatagctcttttgcatgtacaagtagttacaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtgtttcctgtcagtttggatttctatggatagctcttttgcatgtacaagtagttacag 215
Query: 361 atatacaatcttatttcctgccttcctgcctcccttcctccttccctctttttctccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 214 atatacaatcttatttcctgccttcctgcctcccttcctccttccctctttctctccatt 155
Query: 421 cctccctctctccttccctccctctttcccttcttccttccctttctccttccttccttc 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cctccctctcttcttccctccctctttcccttcttccttccctttctccttccttccttc 95
Query: 481 cttccttccttccttcc 497
|||||||||||||||||
Sbjct: 94 cttccttccttccttcc 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
