BAC Information

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BAC

Clone NameMSMg01-419E01
Chromosome18 (Build37)
Map Location 54,822,424 - 54,822,741
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E01.T7 (MSMg01no419_e01.b1)MSMg01-419E01.TJ (MSMg01no419_e01.g1)
ACCAG514398AG514399
length747716
length of high quality
(start - end)
317 (181 - 497)526 (76 - 601)
definitionCHROMAT_FILE: MSMg01no419_e01.b1 PHD_FILE: MSMg01no419_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:42 2005CHROMAT_FILE: MSMg01no419_e01.g1 PHD_FILE: MSMg01no419_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCATTATCTCTCAGCCAAGTCACTGAGATGTGTT
ATTGAATCTCTCAGTTAAACATTCAGTTGTCTTCACTTAAAAGGGATGAA
GGCACTGGAATTACTGGCGTCAGAAGGAGATTTTTCTCAGTAAAATGACA
GGATTTAATTCCATGTAGGTCAACTAGCTGTCATTTTTAGGATTTGGGGC
TGAAAATGTTATTCAACAGCAGAACTTCCAAGGGAACTGGTGGCACCTAA
GCCACCTGTGTCTCTGCATGTCTCCTTTTGTTTGAGAGACCAAAGTTGCT
AATTTGCTGCTGTCTACATAGAGTAAGTTCTATACTTCATGTTATTGACA
AAATAGTGCGTTTACCAACGTGGAGATACAGATGTGAACACCTTGTTCAG
AGTTAGAAGAAACACTGGGTCCAGGGAGAGCTGACTTATCTTTAGCAGGG
TATGGAGCCCATTGGTACAACTGAAATGATGCTGAAAATCAATCTACTTG
AACAGTTTATGTGAAGACCTTTCCTTTCCTGCATTGGGGCCCAATAATTG
CCGAGGGCGAATGTGAACCATTGGACAAGCTCCACTTCTTTTAAAAGAAC
CCGGACTCCCTTTCCCATCATATATAACGCCCTCCCCTTGTATTTTATTT
TAAAAAACGACCCTCGCAAAATTCGCGCCCTTTTTCTATTTCACAAA
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATTCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
AAAAAATTCAGGTGACAGCAGATTCTGTCGAGGAAGTGGAGAAAGAGGAA
TACTCCTCCATTGTTGGTGCGATTGCAGGCTTGTACAACCACTCTGGAAA
TTAGTCTGGCGGTTCCTCATATTATTGGACATAGTACTAACAGAGGATCC
AGCAATACCTCTCCTCGGCATATATCCAGAAGATGTCCCAACCGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAATGAATTT
ATGAAATTCCTAGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACCCATTCACAAAGGAACTCACACAATATGTACTCATTGATAAGTG
GATATTAGCCCCAAACCTATGATACCCAAGATATAAGATATCTTTTGTTT
TACTTCTGATACTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e01.b1 MSMg01no419_e01.b1 CHROMAT_FILE:
MSMg01no419_e01.b1 PHD_FILE: MSMg01no419_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:42 2005
         (317 letters)



>mm_chr18_54822224_54822941
          Length = 718

 Score =  538 bits (278), Expect = e-157
 Identities = 308/318 (96%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttctcagtaaaatgacaggatttaattccatgtaggtcaactagctgtcatttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttctcagtaaaatgacaggatttaattccatgtaggtcaactagctgtcatttttag 260

                                                                       
Query: 61  gatttggggctgaaaatgttattcaacagcagaacttccaagggaactggtggcacctaa 120
           |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 261 gattcggggctgaaaatgttattcaacagcagaacatccacgggaactggtggcacctaa 320

                                                                       
Query: 121 gccacctgtgtctctgcatgtctccttttgtttgagagaccaaagttgctaatttgctgc 180
           |||||||||||||||||||||||||   ||  ||||||||||||||||||||||||||||
Sbjct: 321 gccacctgtgtctctgcatgtctccaactgcatgagagaccaaagttgctaatttgctgc 380

                                                                       
Query: 181 tgtctacatagagtaagttctatacttcatgttattgacaaaatagtgcgtttaccaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctacatagagtaagttctatacttcatgttattgacaaaatagtgcgtttaccaacg 440

                                                                       
Query: 241 tggagatacagatgtgaacaccttgttcagagttagaagaaacact-gggtccagggaga 299
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tggagatacagatgtgaacactttgttcagagttagaagaaacacttgggtccagggaga 500

                             
Query: 300 gctgacttatctttagca 317
           ||||||||||||||||||
Sbjct: 501 gctgacttatctttagca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)