BAC Information

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BAC

Clone NameMSMg01-421K23
Chromosome18 (Build37)
Map Location 85,404,677 - 85,574,181
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421K23.T7 (MSMg01no421_k23.b1)MSMg01-421K23.TJ (MSMg01no421_k23.g1)
ACCAG516253AG516254
length761772
length of high quality
(start - end)		416 (50 - 465)453 (80 - 532)
definitionCHROMAT_FILE: MSMg01no421_k23.b1 PHD_FILE: MSMg01no421_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:57 2005CHROMAT_FILE: MSMg01no421_k23.g1 PHD_FILE: MSMg01no421_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,404,677 - 85,405,088)(85,573,729 - 85,574,181)
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTAATCTTACTGTAACTTGATGTACCAGGGTGAGTTGGT
ACCCTTTTGGGACTTCCACTTCTCTGAGGAGAAGGAGGGAGCTAATGGGG
GGAGGAGAGTTCTGAGTGTGGAACTGAGAGGAAAGGAGGGAGGGTGGGCT
GGGATCAGGATGTAAAGTGAATACATGCATAAGTAAAATTTAATATTAAA
ATCACATTATTCTAATAATTCACAAATTAAGAACACCACAGAGCTACTGT
GACCCAGAAGTTACTTAAGGCCTATGGCTCTTTTCATGCTCCTGTACAGT
AGATAGACTTTACTAAGTGAGAGTGATCTTTGGTATTCTGTCCCTAGTGG
ATTTACAGAATCCATGATTTACTAACGTACTCATTCTATCCAGTTGCTTT
GGTGTTCAGCGTGCAACCCCACACTTTGAGGTCACCTCAGCACCTCCAAT
TGTTGAGCAACATTATGTCTTACCAGTCCCCGTTACTGAATTGCATGAAA
ATGTCCTTCCTTTATGAGCTTCAGAATACCAAACTCCCTTTCCATTTTTA
TCCCTTACTGCTGGAAACTCCCCTCTCCTCTCCCTTATACTGTCTGTCTC
CCCCTGGGCATCTTACAATTTCCCTTCTTTTTTGTCCTCTCCCCCTTTTC
TCTCTTCTCTCTCCTCTGGGTTGTTATTTTCTTTTTCCCCGTCTCTCTCG
AATTCCTTCCT

NNNTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCCGTGGGGTGACAGCTC
ACAACAGCTCTGTTCCTGAAGCTCCCTCCAACAACTCTGAAGAGATCCAG
AAGAATCTCTTCTCAGATATGGATTATTAGTTTATAAACGCAGTGGGAGG
GCAGGGAGCTGTGGACCTTGTATATTCCCACATTCCCTGGTTTGTTTACT
TCCTCAACCTAATGAGCCCCTCTTCTGTTTCCAAGAATGGTATGTTTGGA
GAATCATGACAAAGCTGTGTTTAGGCCATTTTCTTTATCTTAAGTGATTT
TCCTGACATATATGAATGCAACCTTAGAAATTCATGCCAAGTTTTACCAA
TAAGTAAATAAATGACTCTGCCATTCGGCATGCACACTACGTCCCAGGTT
TCCCCTAACAAGTCCTGGTCCATTGCTTCTTGCTTATTTCCCCCAAAGGA
AGTTGAACTGTGTCCTACTCTGTAACATGACATAAGCAACATAAGTAGAC
AGCTAGGACTAAAGTTGATCACGCCTTCTGTGATGACCGATTCCTAGGTA
CAACCACATATACTGGAATGCGAATCTTTATCTCAAAATGACCCCTGGTT
TTTTTTTAAGGGGCCCCAAGAGGACAAAAAAAAATCCTTTATCCCCCCCC
CCCCCAAAAAAACAGGGGGGGGGGGGGGGTTTTATTTGTTAAAAAAAAGG
ATATAAGGGGGGGGTTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_k23.b1 MSMg01no421_k23.b1 CHROMAT_FILE:
MSMg01no421_k23.b1 PHD_FILE: MSMg01no421_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:57 2005
         (416 letters)



>mm_chr18_85404473_85405288
          Length = 816

 Score =  719 bits (372), Expect = 0.0
 Identities = 402/412 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttaatcttactgtaacttgatgtaccagggtgagttggtacccttttgggac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttaatcttactgtaacttgatgtaccagggtgagttggtacccttttgggac 264

                                                                       
Query: 65  ttccacttctctgaggagaaggagggagctaatggggggaggagagttctgagtgtggaa 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ttccacttctctgaggagaaggagggagctaatgcggggaggagagttctgagtgtggaa 324

                                                                       
Query: 125 ctgagaggaaaggagggagggtgggctgggatcaggatgtaaagtgaatacatgcataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagaggaaaggagggagggtgggctgggatcaggatgtaaagtgaatacatgcataag 384

                                                                       
Query: 185 taaaatttaatattaaaatcacattattctaataattcacaaattaagaacaccacagag 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaattttaatattaaaatcacattattctaataattcacaaattaagaacaccacagag 444

                                                                       
Query: 245 ctactgtgacccagaagttacttaaggcctatggctcttttcatgctcctgtacagtaga 304
           ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||
Sbjct: 445 ctactgtgacccagaagttacttaaggcctatggctctaaccatgctcctgtatagtaga 504

                                                                       
Query: 305 tagactttactaagtgagagtgatctttggtattctgtccctagtggatttacagaatcc 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 tagactttactaagtgagagtgatctttggtattctgtccctggtggatttacagaatcc 564

                                                               
Query: 365 atgatttactaacgtactcattctatccagttgctttggtgttcagcgtgca 416
           ||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 565 atgatttactaacgtactcattccatccggttgctttggtgttcagtgtgca 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_k23.g1 MSMg01no421_k23.g1 CHROMAT_FILE:
MSMg01no421_k23.g1 PHD_FILE: MSMg01no421_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:57 2005
         (453 letters)



>mm_chr18_85573529_85574381
          Length = 853

 Score =  861 bits (445), Expect = 0.0
 Identities = 451/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctccgtggggtgacagctcacaacagctctgttcctgaagctccctccaacaactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acctccgtggggtgacagctcacaacagctctgttcctgaagctccctccaacaactctg 594

                                                                       
Query: 61  aagagatccagaagaatctcttctcagatatggattattagtttataaacgcagtgggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagagatccagaagaatctcttctcagatatggattattagtttataaacgcagtgggag 534

                                                                       
Query: 121 ggcagggagctgtggaccttgtatattcccacattccctggtttgtttacttcctcaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 ggcagggagctgtggaccttgtatattcccacattccctggtttgtttacttcctcagcc 474

                                                                       
Query: 181 taatgagcccctcttctgtttccaagaatggtatgtttggagaatcatgacaaagctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taatgagcccctcttctgtttccaagaatggtatgtttggagaatcatgacaaagctgtg 414

                                                                       
Query: 241 tttaggccattttctttatcttaagtgattttcctgacatatatgaatgcaaccttagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 413 tttaggccattttctttatcttaagtgattttcctgacatatatgaatgcaaccttaaaa 354

                                                                       
Query: 301 attcatgccaagttttaccaataagtaaataaatgactctgccattcggcatgcacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 attcatgccaagttttaccaataagtaaataaatgactctgccattcggcatgcacacta 294

                                                                       
Query: 361 cgtcccaggtttcccctaacaagtcctggtccattgcttcttgcttatttcccccaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cgtcccaggtttcccctaacaagtcctggtccattgcttcttgcttatttcccccaaagg 234

                                            
Query: 421 aagttgaactgtgtcctactctgtaacatgaca 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aagttgaactgtgtcctactctgtaacatgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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