BAC Information

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BAC

Clone NameMSMg01-421N09
Chromosome18 (Build37)
Map Location 29,109,780 - 29,110,046
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421N09.T7 (MSMg01no421_n09.b1)MSMg01-421N09.TJ (MSMg01no421_n09.g1)
ACCAG516369AG516370
length780836
length of high quality
(start - end)
267 (331 - 597)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no421_n09.b1 PHD_FILE: MSMg01no421_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:09 2005CHROMAT_FILE: MSMg01no421_n09.g1 PHD_FILE: MSMg01no421_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGAAT
TCAAATATGGGTTACTTCACAATAACAGTAGATACTTGTTTTGGTCAGTA
TCTTTTTTAAGAAACGGAATCCGCAAATTGAATGACTATCCATCAGTACC
CTTTATTGTGAGCATTCCACCAACATCCCTGTTTCTAAAAGAAAATGCAT
AAGAACATCTCCTTGAAATCTTTGAAAAACATGGGCTATGCCATTTCTGG
AAACCCAAAGACAAGCACCCCTAAAAACTGTTAATGGATGTCACCATATT
CTATTTCAACATGTTGAATTTATATTTGTCAATTAAGATTTCAGTGTTTA
ATATGCATACTCAGCAATCAAAACCTAGGACAATTAGGCTGCTCATGTTC
CATTTTCAGAGATATTTGTATTAGAGACTGTGAGTTGACTCCAAAATATA
TGCTGATTCTACATGACCCATTCTCATAGGTTGAGTTGAATATACCTCTG
TAGCAGAAGTGTTTCTTGTTTTTACATAGGAAGAACTTAGTGGCAGGATA
ATAGGCATTCTGCTTGATTGAGTAACCACCTACTTGTATGAATTTAAAGC
TAAGAAGAGAAAGATGTATTAACACCATTGAATTGATTTCTTTTAATCAG
CATAGCATCTTGTTAAGCTTCTTTAACAAGAATACCAACAATATTACAAG
TGATAATTAAAGTATAACAAGTATTTACAGAGTCCTTTTCCTAACCAGCG
TCTAAATGCCTGCCATTGTAAGGCATATGA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTGCCCCATTTTT
TTTAATGAACTTATTTGATTTTCTGGAGTCCAGCTTCTTGAATTCTTTAT
ATATATTGGATATTAGTCCACTATCTGATTTAGGATTGGTAAAGATCCTT
TCCCAATCTGTTGGTGAGGGGTGCTTCTAGTTGCATATGTAGTAAAGGAT
GGCCTAGTCGGCCATCAATGGGAGGAGAGGCCCTTCATCTTGTGAAGATC
ATATGTCCCAGTACAGGGGAATGTTTTGGCCAGGAAGCAGAAATGGGTGG
GTTGGGGAACAGGGTGGGGGGAGCCTCTTCTTCGTGCTCTCTCTCCTTTC
TTTTCTATTTTTTACCTCCCCCTTTCTTCCGTTCTTTTTTTTCTCCCTTT
TTTCCGTCTCCTCTTCTTTTTCTTTTCTTTTTCTCCTTTTCTTTCTTTCT
CTTCTTTCTTTTTCATTCCTCCTACTTCTACTTTTTTCCACCATCCTTGT
TTTTCCTTTTCCATCCCCCCCCTCTTTTCAATTTCTCCTATTCTTCCTCT
ATTCTCCCTTTTCCTTCTTCTTTCTTTTCCCTTCCCGTTCCTCTTCTCTT
TTGTTTTTGCTTCTCCCTTCCCTCTTTCTTCGATCTTTACTATTCTTTTT
TTTTTCTCTTCTCTTATATCATCTTTCTTTTGCCCTCACTTCTTACTTTT
TCACGTCCTCCCTTTTCCCTCTCTCGATCTGTGTCTCTCTCTTCTCTCCT
TCTTTATTTTCTTCTTTCCTCCGCCGTTTTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_n09.b1 MSMg01no421_n09.b1 CHROMAT_FILE:
MSMg01no421_n09.b1 PHD_FILE: MSMg01no421_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:09 2005
         (267 letters)



>mm_chr18_29109580_29110246
          Length = 667

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaagatttcagtgtttaatatgcatactcagcaatcaaaacctaggacaattaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aattaagatttcagtgtttaatatgcatactcagcaatcaaaacctaggacaattaggct 408

                                                                       
Query: 61  gctcatgttccattttcagagatatttgtattagagactgtgagttgactccaaaatata 120
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 407 gctcatgttccaatttcagagatattagtattagagactgtgagttgactccaaaatata 348

                                                                       
Query: 121 tgctgattctacatgacccattctcataggttgagttgaatatacctctgtagcagaagt 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 347 tgctgattctacatgtcccattctcataggttgagttgaatatacctctgtagcagtagt 288

                                                                       
Query: 181 gtttcttgtttttacataggaagaacttagtggcaggataataggcattctgcttgattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtttcttgtttttacataggaagaacttagtggcaggataataggcattctgcttgattg 228

                                      
Query: 241 agtaaccacctacttgtatgaatttaa 267
           |||||||||||||||||||||||||||
Sbjct: 227 agtaaccacctacttgtatgaatttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)